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. 2014 Sep 1;30(9):912–919. doi: 10.1089/aid.2014.0075

Table 1.

Primers Used for Polymerase Chain Reaction Amplification of HIV-1 Near Full-Length Genomes

Name Sequence HXB2 positions Orientationa
SC-A-O-S-R AGATCTGAGCCTGGGAGCTCTCTGG 473–497 S
SC-A-O-A TTTATGGCAAATACTGGAGTATTGTATGGA 2711–2740 A
SC-A-N-S-R GCTTCAAGTAGTGTGTGCCCGTCTG 546–570 S
SC-A-N-A CTTTTGGGCCATCCATTCCTG 2590–2610 A
RP1-S GAAAAAGGGCTGTTGGAAATGTGGAA 2016–2041 S
RP1-A AAATTTAGGAGTCTT TCCCCATATTACTATGC 3685–3716 A
PR-O-S2b GCTAATTTT TTAGGGAARATYTGGCCT T 2080–2107 S
RT-O-A TGCCTCTGTTAATTGTTTTACATCATTAGTGTG 3630–3662 A
RTDS-O-S ATCTATCAATACATGGATGATTTGTATGTAG 3087–3117 S
SC-B-N-A CCCTAGTGGGATGTGTACTTCTGAACTTA 5192–5220 A
RTDS-N-S ATAGGGCAGCATAGARCAAAAATAGA 3132–3157 S
B2-N-A AATCATCACCTGCCATCTGTTTTCC 5043–5067 A
SG3-up TACAGTGCAGGGGAAAGAATAATAGACATAATA 4809–4841 S
SG3-lo AGACCCAGTACAGGCRARAAGC 9523–9544 A
Env-S AGGCATCTCCTATGGCAGGAAGAAG 5957–5983 S
Env-A CCAGTCCCCCCTTTTCTTTTAAAAAG 9063–9088 A
SG3-N-S CAAAATTTTCGGGTTTATTACAGGGACAG 4890–4918 S
SSD2b TCTYTCCACACAGGTACCCCATA 6342–6364 A
NEF-S4 AGTATTGGAGTCAGGAACTAAAGAATAGTG 8626–8655 S
3′ nef-3c GTACAGGCRARAAGCAGCTGCTTATATG 9510–9537 A
a

S, sense; A, antisense.