Table 1.
Name | Sequence | HXB2 positions | Orientationa |
---|---|---|---|
SC-A-O-S-R | AGATCTGAGCCTGGGAGCTCTCTGG | 473–497 | S |
SC-A-O-A | TTTATGGCAAATACTGGAGTATTGTATGGA | 2711–2740 | A |
SC-A-N-S-R | GCTTCAAGTAGTGTGTGCCCGTCTG | 546–570 | S |
SC-A-N-A | CTTTTGGGCCATCCATTCCTG | 2590–2610 | A |
RP1-S | GAAAAAGGGCTGTTGGAAATGTGGAA | 2016–2041 | S |
RP1-A | AAATTTAGGAGTCTT TCCCCATATTACTATGC | 3685–3716 | A |
PR-O-S2b | GCTAATTTT TTAGGGAARATYTGGCCT T | 2080–2107 | S |
RT-O-A | TGCCTCTGTTAATTGTTTTACATCATTAGTGTG | 3630–3662 | A |
RTDS-O-S | ATCTATCAATACATGGATGATTTGTATGTAG | 3087–3117 | S |
SC-B-N-A | CCCTAGTGGGATGTGTACTTCTGAACTTA | 5192–5220 | A |
RTDS-N-S | ATAGGGCAGCATAGARCAAAAATAGA | 3132–3157 | S |
B2-N-A | AATCATCACCTGCCATCTGTTTTCC | 5043–5067 | A |
SG3-up | TACAGTGCAGGGGAAAGAATAATAGACATAATA | 4809–4841 | S |
SG3-lo | AGACCCAGTACAGGCRARAAGC | 9523–9544 | A |
Env-S | AGGCATCTCCTATGGCAGGAAGAAG | 5957–5983 | S |
Env-A | CCAGTCCCCCCTTTTCTTTTAAAAAG | 9063–9088 | A |
SG3-N-S | CAAAATTTTCGGGTTTATTACAGGGACAG | 4890–4918 | S |
SSD2b | TCTYTCCACACAGGTACCCCATA | 6342–6364 | A |
NEF-S4 | AGTATTGGAGTCAGGAACTAAAGAATAGTG | 8626–8655 | S |
3′ nef-3c | GTACAGGCRARAAGCAGCTGCTTATATG | 9510–9537 | A |
S, sense; A, antisense.