Table 1.
|
|
|
|
PRNP mutation |
E200K |
E200K |
E200K |
E200K |
WT |
E200K |
E200K |
E200K |
WT |
E200K |
WT |
E200K |
WT |
E200K |
WT |
WT |
WT |
WT |
WT |
WT |
E219K |
WT |
WT |
WT |
WT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample ID | Patient no. 1 | Patient no. 2 | Patient no. 3 | Family no. 1 | Family no. 2 | Family no. 3 | Family no. 4 | Family no. 5 | Family no. 6 | Family no. 7 | Family no. 8 | Family no. 9 | Family no. 10 | Family no. 11 | Family no. 12 | Normal no. 1 | Normal no. 2 | Normal no. 3 | Normal no. 4 | Normal no. 5 | Normal no. 6 | Normal no. 7 | Normal no. 8 | Normal no. 9 | Normal no. 10 | ||||
Variants filtering strategy |
Chr. |
Position |
Gene |
Year of birth Ref./Obs. |
1948 |
non-descript |
1935 |
1927 |
1950 |
1952 |
1955 |
1957 |
1962 |
1969 |
1971 |
1975 |
1977 |
1981 |
1983 |
1969 |
1975 |
1976 |
1977 |
1980 |
1982 |
1983 |
1983 |
1984 |
1987 |
Filtering strategy 1 |
1 |
27,268,000 |
NUDC |
G/A |
GG |
GG |
GG |
GA |
GG |
GA |
GA |
GA |
GG |
GG |
GG |
GG |
GG |
GA |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
1 |
42,049,603 |
HIVEP3 |
C/T |
CC |
CC |
CC |
CT |
CT |
CC |
CC |
CC |
CT |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CT |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
|
2 |
64,199,317 |
VPS54 |
G/A |
GG |
GG |
GG |
GA |
GG |
GG |
GA |
GA |
GA |
GG |
GG |
GG |
GA |
GA |
GG |
GG |
GG |
GA |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
|
2 |
233,346,498 |
ECEL1 |
C/T |
CC |
CC |
CC |
CT |
CC |
CC |
CC |
CC |
CT |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CT |
CC |
CC |
CT |
CT |
CC |
CC |
CC |
CC |
|
3 |
124,896,625 |
SLC12A8 |
A/G |
AA |
AA |
AA |
AG |
AG |
AA |
AG |
AG |
AA |
AA |
AA |
AA |
AG |
AG |
AG |
AA |
AA |
AA |
AA |
AA |
AA |
AA |
AA |
AA |
AA |
|
4 |
187,153,290 |
KLKB1 |
C/T |
CC |
CC |
CC |
CT |
CC |
CC |
CT |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
|
5 |
139,884,478 |
ANKHD1-EIF4EBP3 |
G/C |
GG |
GG |
GG |
GC |
GG |
GG |
GG |
GG |
GC |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
|
6 |
159,185,617 |
SYTL3 |
T/C |
TT |
TT |
TT |
TC |
TC |
TC |
TT |
TC |
TT |
TT |
TT |
TT |
TT |
TC |
TC |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
|
8 |
2,088,717 |
MYOM2 |
G/T |
GG |
GG |
GG |
GT |
GT |
GT |
GT |
GG |
GT |
GG |
GG |
GG |
GT |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
|
9 |
18,950,859 |
FAM154A |
C/T |
CC |
CC |
CC |
CT |
CT |
CT |
CT |
CC |
CT |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
|
10 |
24,831,649 |
KIAA1217 |
C/T |
CC |
CC |
CC |
CT |
CT |
CT |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
|
11 |
27,016,411 |
FIBIN |
A/G |
AA |
AA |
AA |
AG |
FL |
AA |
AG |
AG |
AG |
AA |
AA |
AA |
AA |
AG |
AA |
AA |
AA |
AG |
AA |
AA |
AA |
AA |
AA |
AA |
AG |
|
11 |
36,250,774 |
LDLRAD3 |
G/T |
GG |
GG |
GG |
GT |
GG |
GT |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
|
11 |
64,453,195 |
NRXN2 |
C/A |
CC |
CC |
CC |
CA |
CC |
CA |
CA |
CA |
CC |
CC |
CC |
CC |
CC |
CA |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
|
13 |
39,588,100 |
PROSER1 |
G/A |
GG |
GG |
GG |
GA |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
|
16 |
75,669,878 |
KARS |
A/G |
AA |
AA |
AA |
AG |
AG |
AA |
AA |
AG |
AA |
AA |
AA |
AA |
AA |
AA |
AG |
AA |
AA |
AA |
AA |
AA |
AA |
AA |
AA |
AA |
AA |
|
17 |
59,489,425 |
C17orf82 |
C/G |
CC |
CC |
CC |
CG |
CG |
CG |
CC |
CG |
CG |
CC |
CC |
CC |
CC |
CC |
CG |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
|
18 |
21,485,578 |
LAMA3 |
G/C |
GG |
GG |
GG |
GC |
GC |
GC |
GC |
GG |
GC |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
GG |
|
19 |
4,359,190 |
MPND |
C/T |
CC |
CC |
CC |
CT |
CT |
CT |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
|
Filtering strategy 2 |
17 |
45,219,336 |
CDC27 |
T/A |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
19 |
501,786 |
MADCAM1 |
C/A |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
CC |
|
19 |
50,510,999 |
VRK3 |
A/T |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
|
19 |
50,511,000 |
C/T |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
TT |
||
19 | 52,096,053 | AC018755.11 | T/A | TA | TA | TA | AA | TA | TA | TA | TA | TA | AA | TA | TT | TA | TA | TA | AA | TA | TA | TT | AA | TT | TA | TA | TA | TT |