Table 3.
Summary of relationship between CNVs and SNPs
| MY | FY | PY | FP | PP | All | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Count | % | Count | % | Count | % | Count | % | Count | % | Count | % | |
| NN | 2 | 11.76% | 2 | 10.53% | 2 | 12.50% | 2 | 28.57% | 8 | 34.78% | 16 | 19.51% |
| LD NS | 2 | 11.76% | 1 | 5.26% | 1 | 6.25% | 0 | 0.00% | 0 | 0.00% | 4 | 4.88% |
| Not tagged | 4 | 23.53% | 3 | 15.79% | 3 | 18.75% | 2 | 28.57% | 8 | 34.78% | 20 | 24.39% |
| LD | 0 | 0.00% | 1 | 5.26% | 2 | 12.50% | 0 | 0.00% | 0 | 0.00% | 3 | 3.66% |
| LD* | 0 | 0.00% | 0 | 0.00% | 0 | 0.00% | 1 | 14.29% | 1 | 4.35% | 2 | 2.44% |
| IN | 4 | 23.53% | 4 | 21.05% | 3 | 18.75% | 0 | 0.00% | 6 | 26.09% | 17 | 20.73% |
| IN* | 6 | 35.29% | 5 | 26.32% | 5 | 31.25% | 4 | 57.14% | 6 | 26.09% | 26 | 31.71% |
| IN** | 3 | 17.65% | 6 | 31.58% | 3 | 18.75% | 0 | 0.00% | 2 | 8.70% | 14 | 17.07% |
| Tagged | 13 | 76.47% | 16 | 84.21% | 13 | 81.25% | 5 | 71.43% | 15 | 65.22% | 62 | 75.61% |
| Total | 17 | 19 | 16 | 7 | 23 | 82 | ||||||
For the meanings of IN*, IN**, LD*, please refer to the main text.