Table 3.
SNP loci with p value < 10−5 according to the GWA analysis or the weight adjustment procedure. chr: chromosome. Adjusted p value is calculated as .
SNP | chr | GWA p value |
|
Li | Adjusted p value | SNP Annotation | Expression | ||
---|---|---|---|---|---|---|---|---|---|
1 | rs17415112 | 10 | 1.20e-07 | 1.28 | 1.10 | 9.37e-08 | EXOSC1 | LOC441019 | |
2 | rs7744944 | 6 | 1.48e-07 | 1.38 | 1.37 | 1.07e-07 | SP140 | ||
3 | rs6536732 | 4 | 5.57e-07 | 0.98 | 1.54 | 5.69e-07 | RMI2 | ||
4 | rs17218497 | 4 | 9.89e-07 | 1.04 | 1.06 | 9.53e-07 | CARD17 | ||
5 | rs931481 | 4 | 2.96e-06 | 0.71 | 1.11 | 4.18e-06 | |||
6 | rs4892151 | 18 | 4.30e-06 | 0.74 | 1.03 | 5.79e-06 | CARD17 | ||
7 | rs767528 | 20 | 4.34e-06 | 1.89 | 1.01 | 2.29e-06 | IFI35 | ||
8 | rs12778761 | 10 | 4.49e-06 | 0.58 | 1.01 | 7.79e-06 | ARHGAP19-SLIT1 | TNFSF10 | |
9 | rs11247300 | 15 | 5.53e-06 | 0.51 | 1.44 | 1.07e-05 | PCSK6 | LGALS9 | |
10 | rs306254 | 5 | 5.83e-06 | 0.68 | 0.90 | 8.54e-06 | SP140 | ||
11 | rs2810693 | 13 | 6.90e-06 | 0.63 | 1.17 | 1.10e-05 | GBP5 | ||
12 | rs173577 | 5 | 6.99e-06 | 0.57 | 0.92 | 1.23e-05 | RNASE2 | ||
13 | rs4919096 | 10 | 8.09e-06 | 0.66 | 0.80 | 1.23e-05 | TIMM10 | ||
14 | rs596346 | 11 | 1.22e-05 | 1.54 | 1.30 | 7.95e-06 | BC041900 | FAM212B | |
15 | rs624676 | 11 | 1.40e-05 | 1.46 | 1.39 | 9.55e-06 | BC041900 | FAM212B | |
16 | rs514604 | 11 | 1.40e-05 | 1.46 | 1.39 | 9.55e-06 | BC041900 | FAM212B |