Table 5.
MLR::Cyscore | RF::Cyscore | RF::CyscoreVina | RF::CyscoreVinaElem | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cluster name | Cluster | N | RMSE | SD | Rp | Rs | RMSE | SD | Rp | Rs | RMSE | SD | Rp | Rs | RMSE | SD | Rp | Rs |
HIV protease | A | 188 | 1.65 | 1.53 | 0.259 | 0.216 | 1.70 | 1.51 | 0.310 | 0.201 | 1.76 | 1.56 | 0.182 | 0.105 | 1.77 | 1.56 | 0.166 | 0.129 |
trypsin | B | 74 | 1.24 | 1.11 | 0.612 | 0.695 | 1.10 | 1.11 | 0.610 | 0.636 | 0.96 | 0.97 | 0.723 | 0.700 | 0.93 | 0.93 | 0.751 | 0.715 |
carbonic anhydrase | C | 57 | 2.47 | 1.35 | 0.473 | 0.343 | 2.44 | 1.43 | 0.368 | 0.264 | 2.60 | 1.37 | 0.448 | 0.372 | 2.33 | 1.35 | 0.481 | 0.234 |
thrombin | D | 53 | 1.52 | 1.40 | 0.702 | 0.676 | 1.50 | 1.44 | 0.680 | 0.611 | 1.47 | 1.45 | 0.675 | 0.675 | 1.46 | 1.40 | 0.699 | 0.680 |
protein tyrosine phosphatase | E | 32 | 1.23 | 1.06 | 0.411 | 0.313 | 1.30 | 1.10 | 0.338 | 0.268 | 1.36 | 0.98 | 0.538 | 0.542 | 1.23 | 0.89 | 0.643 | 0.615 |
factor Xa | F | 32 | 1.18 | 0.96 | 0.604 | 0.634 | 1.54 | 1.13 | 0.367 | 0.356 | 1.53 | 1.02 | 0.533 | 0.498 | 1.61 | 1.07 | 0.470 | 0.470 |
urokinase | G | 29 | 1.15 | 1.14 | 0.643 | 0.602 | 1.10 | 1.14 | 0.642 | 0.645 | 1.25 | 1.27 | 0.516 | 0.436 | 1.05 | 1.06 | 0.699 | 0.624 |
different similar transporters | H | 29 | 0.96 | 0.96 | 0.285 | 0.122 | 1.27 | 0.99 | 0.056 | -0.040 | 1.10 | 0.98 | 0.188 | 0.077 | 1.01 | 0.93 | 0.354 | 0.123 |
c-AMP dependent kinase | I | 17 | 1.32 | 1.15 | 0.537 | 0.537 | 1.16 | 1.11 | 0.582 | 0.602 | 0.94 | 0.91 | 0.748 | 0.664 | 1.06 | 0.91 | 0.747 | 0.644 |
β-glucosidase | J | 17 | 1.03 | 0.78 | 0.383 | 0.316 | 1.04 | 0.76 | 0.444 | 0.365 | 0.92 | 0.72 | 0.518 | 0.443 | 1.05 | 0.68 | 0.597 | 0.649 |
antibodies | K | 16 | 1.41 | 1.43 | 0.693 | 0.706 | 1.67 | 1.76 | 0.455 | 0.466 | 1.47 | 1.51 | 0.645 | 0.643 | 1.36 | 1.33 | 0.739 | 0.777 |
casein kinase II | L | 16 | 0.75 | 0.58 | 0.538 | 0.358 | 0.76 | 0.58 | 0.535 | 0.330 | 0.90 | 0.60 | 0.493 | 0.322 | 0.97 | 0.61 | 0.454 | 0.309 |
ribonuclease | M | 15 | 1.12 | 1.20 | 0.230 | 0.340 | 1.07 | 1.06 | 0.505 | 0.281 | 1.11 | 0.99 | 0.595 | 0.481 | 1.23 | 1.03 | 0.551 | 0.493 |
thermolysin | N | 14 | 1.15 | 1.14 | 0.680 | 0.635 | 0.98 | 1.03 | 0.748 | 0.648 | 1.04 | 1.12 | 0.696 | 0.565 | 0.97 | 1.05 | 0.738 | 0.636 |
CDK2 kinase | O | 13 | 1.06 | 0.80 | 0.841 | 0.812 | 1.14 | 1.01 | 0.733 | 0.817 | 1.14 | 1.02 | 0.729 | 0.661 | 1.12 | 1.14 | 0.640 | 0.525 |
glutamate receptor 2 | P | 13 | 1.08 | 0.85 | 0.070 | 0.096 | 1.09 | 0.85 | 0.120 | 0.097 | 1.08 | 0.85 | 0.116 | 0.121 | 1.00 | 0.84 | 0.123 | 0.016 |
P38 kinase | Q | 13 | 0.55 | 0.57 | 0.834 | 0.896 | 0.76 | 0.66 | 0.762 | 0.757 | 0.95 | 0.62 | 0.799 | 0.764 | 0.59 | 0.51 | 0.870 | 0.896 |
β-secretase I | R | 12 | 1.44 | 1.33 | 0.892 | 0.725 | 1.57 | 1.51 | 0.858 | 0.620 | 1.54 | 1.51 | 0.860 | 0.687 | 1.43 | 1.31 | 0.895 | 0.687 |
tRNA-guanine transglycosylase | S | 12 | 0.90 | 0.95 | 0.463 | 0.544 | 1.06 | 1.04 | 0.212 | 0.375 | 0.87 | 0.95 | 0.457 | 0.403 | 0.87 | 0.95 | 0.457 | 0.522 |
endothiapepsin | T | 11 | 1.18 | 1.30 | 0.435 | 0.215 | 1.28 | 1.35 | 0.358 | 0.210 | 1.35 | 1.36 | 0.345 | 0.215 | 1.36 | 1.27 | 0.480 | 0.210 |
α-mannosidase 2 | U | 10 | 1.67 | 1.63 | -0.004 | 0.248 | 1.65 | 1.62 | 0.116 | 0.188 | 1.73 | 1.62 | 0.089 | 0.176 | 1.83 | 1.63 | 0.053 | 0.103 |
carboxypeptidase A | V | 10 | 2.13 | 1.99 | 0.479 | 0.523 | 1.90 | 1.89 | 0.556 | 0.370 | 1.82 | 1.76 | 0.632 | 0.467 | 1.77 | 1.54 | 0.734 | 0.685 |
penicillopepsin | W | 10 | 1.71 | 1.87 | 0.339 | 0.188 | 1.78 | 1.94 | 0.236 | 0.188 | 1.81 | 1.96 | 0.183 | 0.030 | 1.91 | 1.99 | 0.078 | -0.030 |
families with 4-9 complexes | X | 386 | 1.73 | 1.71 | 0.500 | 0.577 | 1.61 | 1.60 | 0.587 | 0.598 | 1.58 | 1.56 | 0.610 | 0.612 | 1.54 | 1.53 | 0.630 | 0.632 |
families with 2-3 complexes | Y | 340 | 1.64 | 1.64 | 0.510 | 0.495 | 1.64 | 1.63 | 0.522 | 0.505 | 1.55 | 1.55 | 0.583 | 0.580 | 1.51 | 1.52 | 0.608 | 0.595 |
singletons | Z | 321 | 1.76 | 1.74 | 0.407 | 0.417 | 1.81 | 1.75 | 0.397 | 0.395 | 1.70 | 1.68 | 0.476 | 0.467 | 1.67 | 1.65 | 0.503 | 0.507 |
average | 1.35 | 1.24 | 0.493 | 0.470 | 1.38 | 1.27 | 0.465 | 0.414 | 1.37 | 1.23 | 0.515 | 0.450 | 1.33 | 1.18 | 0.545 | 0.479 | ||
standard deviation | 0.41 | 0.38 | 0.216 | 0.217 | 0.38 | 0.37 | 0.209 | 0.212 | 0.39 | 0.36 | 0.211 | 0.211 | 0.39 | 0.35 | 0.228 | 0.251 |