Table 2.
Comparison between differentially expressed genes in uninoculated CO441 and CO354 genotypes
| Functional category | N° genes | |
|---|---|---|
| FPKM_CTRL CO441 > 5; 0 ≤ FPKM_CTRL CO354 < 0.5 | FPKM_CTRL CO354 > 5; 0 ≤ FPKM_CTRL CO441 < 0.5 | |
| All defense-related genes | 29 | 7 |
| Cell wall | 1 | 4 |
| Resistance | 5 | 1 |
| Response to stress | 12 | 2 |
| Secondary metabolism | 11 | / |
| Cell component | 9 | 2 |
| Electron/energy | 8 | 1 |
| Metabolic process | 90 | 17 |
| Miscellanea | 20 | 2 |
| Photosynthesis | 1 | 1 |
| Proteolysis | 4 | 2 |
| Signal transduction | 31 | 4 |
| Transport | 9 | / |
| Unknown function | 101 | 21 |
The table shows the total number of genes whose basal expression is higher in the resistant CO441 or susceptible CO354 genotype within each category, considering the following filters: FPKM >5 in CO441 and 0 ≤ FPKM <0.5 in CO354, and FPKM > 5 in CO354 and 0 ≤ FPKM < 0.5 in CO441, respectively. Defense-related genes considered for the comparison are those functionally categorized as ‘cell wall’, ‘resistance’, ‘response to stress’ and ‘secondary metabolism’.