Table 4.
Regulation of transcription
| Official Gene Symbol | Change, log2(fold) | Phosphorylated Amino Acid Site | Name |
|---|---|---|---|
| TCEB3 | 2.91 | S542 | Elongin A |
| CREB5 | 2.69 | T59, T61 | cAMP responsive element-binding protein 5 isoform α |
| ATF7 | 2.64 | T51, T53 | Activating transcription factor 7 isoform 3 |
| JUN | 2.13 | T62 | jun oncogene |
| 2.07 | S63 | ||
| −1.86 | S243 | ||
| ATF7IP | 2.11 | S113, T118 | Activating transcription factor 7-interacting protein |
| PAWR | 1.95 | T230 | PRKC, apoptosis, WT1, regulator |
| ZMYM2 | 1.77 | S305 | Zinc finger protein 198 |
| ATF2 | 1.76 | T69, T71 | Activating transcription factor 2 |
| HCFC1 | 1.57 | S598 | Host cell factor 1 |
| 2.42 | S666 | ||
| STAT1 | 1.24 | S727 | Signal transducer and activator of transcription 1 |
| SUV39H1 | −1.01 | S391 | Suppressor of variegation 3–9 homolog 1 |
| YBX1 | −1.02 | S165 | Nuclease-sensitive element-binding protein 1 |
| BRWD1 | −1.06 | S1475 | Bromodomain and WD repeat domain-containing 1 |
| DMAP1 | −1.13 | T445 | DNA methyltransferase 1-associated protein 1 |
| LRRFIP1 | −1.19 | S88 | Leucine-rich repeat (in FLII)- interacting protein 1 isoform 2 |
| ARID1A | −1.20 | S696, S702 | AT-rich interactive domain 1A isoform a |
| DNTTIP2 | −1.22 | S117 | Deoxynucleotidyltransferase, terminal, interacting protein 2 |
| MED24 | −1.26 | S860 | Mediator complex subunit 24 isoform 2 |
| 2.55 | S849 | ||
| SUPT5H | −1.32 | S666 | Suppressor of Ty 5 homolog isoform a |
| RDBP | −1.34 | S353 | RD RNA-binding protein |
| 2.25 | S115 | ||
| 2.80 | S51 | ||
| 3.10 | S49 | ||
| HMGA1 | −1.37 | S91, S92 | High-mobility group AT-hook 1 isoform b |
| DPF2 | −1.39 | S142 | Zinc finger protein ubi-d4 |
| FOXK2 | −1.40 | S398 | Forkhead box K2 |
| AFF4 | −1.53 | S1043 | ALL1 fused gene from 5q31 |
| DAXX | −1.63 | S683 | Death domain-associated protein isoform b |
| RNF20 | −1.65 | S138 | Ring finger protein 20 |
| PML | −1.69 | S518, S527 | Promyelocytic leukemia protein isoform 1 |
| HMGA2 | −1.69 | S101 | High-mobility group AT-hook 2 isoform a |
| TLE3 | −1.74 | T334 | Transducin-like enhancer protein 3 isoform a |
| SAFB | −1.86 | S604 | Scaffold attachment factor B |
| YEATS2 | −1.86 | S519 | YEATS domain-containing 2 |
| ZNF462 | −1.92 | S688 | Zinc finger protein 462 |
| NFX1 | −1.96 | S50 | Nuclear transcription factor, X-box-binding 1 isoform 2 |
| SLTM | −2.00 | S1002 | Modulator of estrogen-induced transcription isoform a |
| RFX7 | −2.16 | S1178 | Regulatory factor X domain-containing 2 |
| FOXC1 | −2.23 | S235, S241 | Forkhead box C1 |
| ZNF768 | −2.36 | S90, S97 | Zinc finger protein 768 |
| MAF1 | −2.44 | S75 | MAF1 protein |
| ZNF446 | −2.45 | S137 | Zinc finger protein 446 |
| POLR2A | −2.46 | S1878, T1884 | DNA-directed RNA polymerase II polypeptide A |
| GTF2F1 | −2.60 | T389 | General transcription factor IIF subunit 1 |
| ZNF687 | −2.74 | S253 | Zinc finger protein 687 |
| GATAD2B | −2.88 | S333 | GATA zinc finger domain-containing 2B |
| 1.01 | S486 | ||
| MTA1 | −3.21 | T578 | Metastasis-associated protein |
| −1.70 | S576 |