Table 2. Summary of genome assembly statistics from various assembly approaches.
Sage-Grouse | Clark's Nutcracker | |||||||
Reference-guided | Reference-guided | |||||||
De novo | Coverage >1x | Coverage >2x | Coverage >5x | De novo | Coverage >1x | Coverage >2x | Coverage >5x | |
% N Bases | 0.04 | 44.35 | 63.36 | 79.99 | 0.09 | 39.55 | 55.86 | 76.34 |
N50 - No Break | 343 | 90,198,103 | 90,394,695 | 90,527,046 | 503 | 65,905,513 | 73,959,172 | 74,132,310 |
N50 - Break 500 | – | 12,125 | 4,447 | 1,804 | – | 13,369 | 6,765 | 2,409 |
Complete CEGs | 0 | 12 | 0 | 0 | 4 | 76 | 20 | 1 |
The terms ‘no break’ and ‘break 500’ refer to whether or not contigs were broken up by deleting regions that contained stretches of 500 or more ambiguous (“N”) nucleotides, and CEGs refer to core eukaryotic genes.