Table 2. RNA-Seq reads mapped to NCBI mouse genome build 37 using TopHat.

	Control			SMA
	Sample 1	Sample 2	Sample 3	Sample 1	Sample 2	Sample 3
Total Reads	29,763,880	14,863,496	36,877,629	37,203,080	32,327,505	44,570,352
Reads Removed	23.86%	22.74%	23.65%	29.20%	28.81%	28.16%
Reads Mapped	74.49%	75.50%	74.88%	69.33%	69.67%	70.60%