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. 2014 Aug 29;70(Pt 9):1127–1131. doi: 10.1107/S2053230X14013995

Table 1. X-ray crystallographic data and final protein plus ligand model-refinement statistics for both the cisplatin and carboplatin crystals.

Values in parentheses are for the last shell.

  Cisplatin/NaI Carboplatin/NaI
PDB code 4ow9 4owa
Data-collection temperature (K) 100 100
Data reduction
 Space group P21 P21
 Unit-cell parameters (Å, °) a = 27.25, b = 62.54, c = 58.98, β = 90.92 a = 27.14, b = 62.28, c = 58.05, β = 92.59
 Molecules per asymmetric unit 2 2
 Observed reflections 110261 104255
 Unique reflections 11636 20257
 Resolution (Å) 31.27–2.10 (2.15–2.10) 29.04–1.80 (1.90–1.80)
 Completeness (%) 90.1 (55.7) 94.3 (78.0)
R merge (%) 0.130 (0.229) 0.099 (0.340)
 〈I/σ(I)〉 11.7 (3.5) 11.7 (1.9)
 Multiplicity 6.9 (1.6) 5.7 (1.4)
Refinement
 Cruickshank DPI (Å) 0.11 0.18
 No. of atoms
  Protein 2002 2002
  Water molecules 39 147
  Pt and halogen atoms 34 42
  Other bound atoms 28 28
 Average B factor (Å2)    
  Protein atoms 21.1 12.2
  Water molecules 18.8 19.2
  Pt and halogen atoms 29.1 20.9
  Other bound atoms 24.8 18.4
   R factor/R free (%) 19.7/27.1 18.4/24.0
  R.m.s.d., bonds (Å)/angles (°) 0.010/1.5 0.015/1.6
 Ramachandran values (%)
  Most favoured 94.1 96.5
  Additional allowed 5.2 3.1
  Disallowed 0.8 0.4

The PDB validation report includes phenix.xtriage statistics; subsequent use of DETWIN in CCP4 suggested that the data were 6% twinned. To our knowledge, no twinning has been reported for this form of HEWL in NaI conditions before. Turning on amplitude twin refinement in REFMAC improved the R/R free from 19.7/27.5% to 19.7/27.1%. The electron-density maps at the His binding sites as well as in general were the same with and without using twin refinement, presumably owing to the rather small twin fraction.

The disallowed residues are Asp18, Ser72 and Arg73 and are part of a loop/turn region.