TABLE 4.
Molecular analysis of Tn10dTet insertions in yggA
Strain | yggA (argO) allelea | Characteristics of Tn10dTet insertion
|
Site of YggA truncationd | |
---|---|---|---|---|
Coordinates of 9-bp duplicated regionb | Orientationc | |||
GJ4676 | 204 | 8926-8934 | I | V77 |
GJ4677 | 205 | 9046-9054 | II | I37 |
GJ4678 | 206 | 8926-8934 | II | V77 |
GJ4679 | 207 | 9010-9018 | I | V49 |
GJ4680 | 208 | 9009-9017 | II | V49 |
GJ4681 | 209 | 8923-8931 | I | A78 |
GJ4682 | 210 | 9170-9178 | II | —e |
Based on the results described in this paper, yggA has been redesignated argO.
The coordinates of the 9-bp host sequence duplication after Tn10dTet insertion (25, 33), inferred from determination of the junction sequence at the counterclockwise end of the insertion, are given. The coordinates are based on the work of Blattner et al. (5) (GenBank accession number AE000375), according to which the yggA open reading frame extends from bp 9156 to 8521 on the complementary strand (211 sense codons).
Orientation I is that in which the sequence (in the Tn10dTet insertion) for primer TetR is counterclockwise to that for primer TetF, and the reverse is true for orientation II.
The residue number and identity (in one-letter code) of the terminal amino acid upstream of the insertion are indicated.
—, the argO210 insertion is situated 22 bp upstream of the yggA open reading frame.