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. 2004 Jun;186(11):3539–3546. doi: 10.1128/JB.186.11.3539-3546.2004

TABLE 4.

Molecular analysis of Tn10dTet insertions in yggA

Strain yggA (argO) allelea Characteristics of Tn10dTet insertion
Site of YggA truncationd
Coordinates of 9-bp duplicated regionb Orientationc
GJ4676 204 8926-8934 I V77
GJ4677 205 9046-9054 II I37
GJ4678 206 8926-8934 II V77
GJ4679 207 9010-9018 I V49
GJ4680 208 9009-9017 II V49
GJ4681 209 8923-8931 I A78
GJ4682 210 9170-9178 II e
a

Based on the results described in this paper, yggA has been redesignated argO.

b

The coordinates of the 9-bp host sequence duplication after Tn10dTet insertion (25, 33), inferred from determination of the junction sequence at the counterclockwise end of the insertion, are given. The coordinates are based on the work of Blattner et al. (5) (GenBank accession number AE000375), according to which the yggA open reading frame extends from bp 9156 to 8521 on the complementary strand (211 sense codons).

c

Orientation I is that in which the sequence (in the Tn10dTet insertion) for primer TetR is counterclockwise to that for primer TetF, and the reverse is true for orientation II.

d

The residue number and identity (in one-letter code) of the terminal amino acid upstream of the insertion are indicated.

e

—, the argO210 insertion is situated 22 bp upstream of the yggA open reading frame.

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