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. 2004 Jun;186(11):3415–3422. doi: 10.1128/JB.186.11.3415-3422.2004

FIG. 3.

FIG. 3.

Phylogenetic tree derived from the alignment of d-Ala:d-Lac, d-Ala:d-Ser, and selected d-Ala:d-Ala ligases. The tree was constructed by the neighbor-joining method, taking into account the results of maximum-parsimony and bootstrapping analysis. Sequences of the ligases are from Amycolatopsis orientalis (AAD19835), Bacillus subtilis 168 (CAB12263), C. acetobutylicum [Ddl] (AAK80837), C. innocuum [Ddl c. innocuum] (), C. perfringens [DdlA] (BAB81021), C. perfringens [DdlB] (BAB80525), C. tetani [DdlA] (AAO34934), C. tetani [DdlB] (AAO35288), D. hafniense [Ddl] (ZP_00099215), E. coli K12 [DdlA] (NP_414915), E. coli K12 [DdlB] (NP_414634), E. casseliflavus [VanC2] (AAA60990), E. faecalis V583 [VanB] (2007289A), E. gallinarum BM4174 [VanC1] (AAA24786), E. faecalis [VanD] (AAM09849), E. faecalis BM4405 [VanE] (AAL27442), E. faecalis WCH9 [VanG] (AAF71281), E. faecalis [Ddl] (AAC43218), E. faecium BM4147 [VanA] (AAA65956), E. faecium [Ddl] (ZP_00036460), E. gallinarum BM4174 [Ddl1] (AAN62561), E. gallinarum BM4174 [Ddl2] (AAK97387), E. hirae [Ddl] (Q47827), Lactococcus lactis (AAK04439), Leuconostoc mesenteroides [Ddl] (Q48745), Listeria monocytogenes (CAC98933), M. tuberculosis [Ddl] (CAB05431), P. popillae (AAF36803), Salmonella enterica serovar Typhi [DdlA] (AA070072), S. aureus [Ddl] (BAB43170), S. agalactiae [Ddl] (AAM99654), S. pneumoniae [Ddl] (CAB64467), Streptomyces coelicolor [Ddl] (NP_627790), and Streptomyces toyocaensis [Ddl] (AAC23582).