Table 2. Determination of allelic diversity at each MIRU-VNTR locus of 197 isolates of the Euro-American lineage.
TR copiesa | Number of isolates at MIRU-VNTR locus | ||||||||||||||
VNTR 42 | VNTR 43 | MIRU 04 | MIRU 40 | MIRU 10 | MIRU 16 | 1955 | QUB-11b | ETR-A | VNTR 47 | MIRU 26 | MIRU 31 | VNTR 52 | QUB-26 | VNTR 53 | |
0 | 18 | 1 | 5 | 18 | |||||||||||
1 | 79 | 2 | 2 | 58 | 15 | 9 | 3 | 2 | 65 | 19 | 12 | 5 | 37 | ||
2 | 73 | 14 | 186 | 35 | 6 | 55 | 74 | 41 | 111 | 84 | 21 | 38 | 79 | 5 | 93 |
3 | 10 | 41 | 7 | 43 | 76 | 115 | 102 | 51 | 71 | 1 | 14 | 150 | 83 | 8 | 40 |
4 | 5 | 130 | 50 | 91 | 10 | 9 | 67 | 13 | 47 | 33 | 8 | 10 | 24 | 3 | |
5 | 8 | 1 | 6 | 21 | 3 | 20 | 82 | 1 | 8 | 52 | |||||
6 | 4 | 2 | 13 | 8 | 37 | ||||||||||
7 | 1 | 1 | 17 | 32 | |||||||||||
8 | 2 | 18 | |||||||||||||
9 | 1 | 11 | |||||||||||||
Ub | 12 | 2 | 2 | 1 | 1 | 5 | 6 | ||||||||
Allelic diversity | 0.65 | 0.50 | 0.10 | 0.77 | 0.62 | 0.56 | 0.58 | 0.76 | 0.55 | 0.65 | 0.76 | 0.38 | 0.65 | 0.83 | 0.67 |
Numbers of repeat units at the MIRU-VNTR locus.
U, undetermined (no PCR product was obtained; not considered for calculation of allelic diversity.