Table 2.
Known polymorphisms in the caspase 4 gene between 129/SvIm and FVB/NJ strains of mice
| Mbp location (Build 37) |
NCBI gene annotation |
dbSNP rs |
dbSNP 128 SNP annotation |
129S1/ SvImJ |
129X1/ SvJ |
AKR/ J |
WSB/ EiJ |
FVB/ NJ |
A/J | BALB/ cByJ |
BTBR T + tf/ J |
C3H/ HeJ |
C57BL/ 6 J |
DBA/ 2 J |
KK/ HlJ |
NOD/ ShiLtJ |
NZW/ LacJ |
CAST/ EiJ |
MOLF/ EiJ |
PWD/ PhJ |
Source |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5.3069 | Casp1 intron9 | rs30020524 | Casp1 I Casp4 L |
T | T | T | T | A | A | A | A | A | A | A | A | A | A | T | T | (Celera2, Perlegen2) | |
| 5.3216 | Casp4 intron2 | rs32240574 | I | G | G | G | A | A | A | A | A | A | A | A | A | A | Perlegen2 NES11336258 | ||||
| 5.3220 | Casp4 intron2 | rs32240577 | I | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | T | Perlegen2 NES11336259 | |
| 5.3225 | Casp4 intron2 | rs3657871 | I | C | C | C | G | G | G | G | G | G | G | G | G | G | G | G | G | (Perlegen2, WICGR2) | |
| 5.3226 | Casp4 intron2 | rs3658578 | I | T | T | T | G | G | G | G | G | G | G | G | G | G | G | T | T | (Perlegen2, WICGR2) | |
| 5.3227 | Casp4 intron2 | rs3659109 | I | A | A | A | G | G | G | G | G | G | G | G | G | G | A | A | (Perlegen2, WICGR2) | ||
| 5.3227 | Casp4 intron2 | rs3659157 | I | T | T | T | A | A | A | A | A | A | A | A | A | A | (Perlegen2, WICGR2) | ||||
| 5.3230 | Casp4 intron3 | rs16783245 | I | T | T | T | C | C | C | C | C | C | C | C | C | C | Perlegen2 NES11336270 | ||||
| 5.3247 | Casp4 intron4 | rs3722091 | I | A | A | A | A | C | C | C | C | C | C | C | C | C | C | C | C | C | (Celera2, Perlegen2, WICGR2) |
| 5.3323 | Casp4 intron7 | rs30511331 | I | G | G | G | G | A | A | A | A | A | A | A | A | A | A | G | G | G | (Celera2, Perlegen2) |
| 5.3362 | Casp4 intron8 | rs31544867 | I | T | T | T | T | A | A | A | A | A | A | A | A | A | ? | A | A | A | (CGD2, Celera2, Perlegen2) |
| 5.3364 | Casp4 intron8 | rs31485595 | I | C | C | C | C | G | G | G | G | G | G | G | G | G | C | C | (Celera2, Perlegen2) | ||
| 5.3366 | Casp4 UTR | rs31661027 | U | G | G | G | A | A | A | A | A | A | A | A | A | A | A | A | (Celera2, Perlegen2) |
Thirteen polymorphisms between 129/SvIm and FVB/NJ strains and their allele distribution among the other 16 strains in the high-density SNP set in the Mouse Phenome Database (MPD).
This set consists of 7–9 million genomic locations for the 18 strains of mice