Table 2.
Characteristics of the degradome sequences from orange leaf, flower and fruit
| Total RNAs | Unique RNAs | ||
|---|---|---|---|
| Leaf | Raw reads | 22826037 | |
| Clean readsa | 20566571 (100%) | 1448803 (100%) | |
| Match mRNA reference dataset | 17683257 (85.98%) | 1055651 (72.86%) | |
| Flower | Raw reads | 19030542 | |
| Clean readsa | 17629275 (100%) | 1093131 (100%) | |
| Match mRNA reference dataset | 14577696 (82.69%) | 733751 (67.12%) | |
| Fruit | Raw reads | 21213198 | |
| Clean readsa | 18284467 (100%) | 331940 (100%) | |
| Match mRNA reference dataset | 16047135 (87.76%) | 187295 (56.42%) |
aLow quality sequences, sequences shorter than 18 nt, and adaptor contaminants were removed.