Table 3.
Target genes grouped into category I of novel miRNAs in orange
| Category | |||||
|---|---|---|---|---|---|
| Novel miRNA | Target gene | in leaves | in flowers | in fruit | Annotation |
| Csi-miRN02 | Cs1g08400 | I | N/A | N/A | Chaperonin CPN60-1 |
| Csi-miRN02 | Cs3g18790 | I | II | I | Alkylated DNA repair protein alkB homolog 8 |
| Csi-miRN02 | Cs8g12570 | I | N/A | N/A | LRR receptor-like serine/threonine-protein kinase EFR |
| Csi-miRN07 | Cs8g09620 | III | I | N/A | SRF-type transcription factor family protein |
| Csi-miRN11 | Cs8g13560 | I | III | I | No annotation |
| Csi-miRN20 | Cs1g12230 | N/A | N/A | I | Protein FAR1-RELATED SEQUENCE 6 |
| Csi-miRN20 | Cs3g05320 | I | III | I | No annotation |
| Csi-miRN37 | orange1.1 t02400 | II | I | N/A | Indole-3-acetic acid-induced protein ARG7 |
N/A means not available in the degradome data. Target transcripts were divided into three classes. In category I, the miRNA-guided cleavage fragment was the most abundant tag matching the transcript; In category II, the miRNA-guided cleavage fragment was not the most abundant fragment; however, it still formed a clear peak in the T-plot. The remaining target transcripts were classified into category III.