Table 2.
Statistical construction of the genetic structure of the 4p16.1 region
| SNP1 | pos1 | SNP2 | pos2 | dist | LD (r2) | P-value | Variance explained (%) |
|---|---|---|---|---|---|---|---|
| rs3733588 | 9 997 303 | 6.9E−60 | 4.5 | ||||
| rs874432 | 9 920 606 | 1.4E−10 | 5.5 | ||||
| rs4697695 | 9 915 850 | 3.1E−04 | 5.7 | ||||
| rs9291683 | 10 324 160 | 4.6E−03 | 5.7 | ||||
| rs11734783 | 10 240 663 | 1.4E−02 | 5.9 | ||||
| rs731069 | 10 152 431 | rs10939766 | 10 204 970 | 52.5 | 0.227 | 1.5E−02 | 5.8 |
| rs4698000 | 10 277 467 | rs11943276 | 10 403 545 | 126.1 | 0.042 | 1.7E−02 | 5.9 |
| rs6813385 | 10 148 828 | rs16894270 | 10 165 779 | 17.0 | 0.142 | 7.2E−03 | 6.0 |
only additive effects considered for first marginal SNPs; SNP1 (SNP2), pos1 (pos2)— name and position the first (second) SNP; dist—distance in kb between two SNPs; LD (r2)— linkage disequilibrium between two SNPs; P-value of a marginal SNP or interaction P-value of an epistatic SNP pair; Variance explained—SUA residual variance explained accumulated; blank cells: no information required.