Table 2. Tabulation of Various [4Fe–4S] Cluster Distances (in Å) Obtained from Geometry Optimizations of Various Protonation Conformers of an Active Site Model of the Oxidized IspH Systema.
cluster distances | exp32 | RO–P–EH | RO–PHEH | ROHP–E– | ROHPHE– | ROHP–EH | ROHPHEH |
---|---|---|---|---|---|---|---|
Fe1–S1 | 2.344 | 2.275 | 2.281 | 2.218 | 2.215 | 2.200 | 2.209 |
Fe1–S2 | 2.393 | 2.351 | 2.351 | 2.301 | 2.298 | 2.282 | 2.280 |
Fe1–S3 | 2.364 | 2.378 | 2.370 | 2.328 | 2.317 | 2.319 | 2.313 |
Fe2–S1 | 2.217 | 2.340 | 2.347 | 2.323 | 2.324 | 2.328 | 2.333 |
Fe2–S2 | 2.186 | 2.212 | 2.213 | 2.203 | 2.201 | 2.206 | 2.210 |
Fe2–S4 | 2.181 | 2.385 | 2.380 | 2.362 | 2.359 | 2.357 | 2.353 |
Fe3–S1 | 2.319 | 2.328 | 2.330 | 2.313 | 2.317 | 2.305 | 2.305 |
Fe3–S3 | 2.281 | 2.240 | 2.239 | 2.236 | 2.237 | 2.240 | 2.238 |
Fe3–S4 | 2.306 | 2.377 | 2.372 | 2.357 | 2.350 | 2.361 | 2.360 |
Fe4–S2 | 2.308 | 2.321 | 2.322 | 2.314 | 2.319 | 2.326 | 2.325 |
Fe4–S3 | 2.217 | 2.320 | 2.323 | 2.320 | 2.324 | 2.322 | 2.326 |
Fe4–S4 | 2.276 | 2.279 | 2.280 | 2.245 | 2.242 | 2.241 | 2.242 |
Fe2–SC12 | 2.283 | 2.305 | 2.303 | 2.263 | 2.258 | 2.256 | 2.257 |
Fe3–SC197 | 2.285 | 2.314 | 2.306 | 2.283 | 2.274 | 2.275 | 2.271 |
Fe4–SC96 | 2.264 | 2.321 | 2.314 | 2.295 | 2.290 | 2.295 | 2.291 |
Fe1–Fe2 | 2.792 | 2.815 | 2.822 | 2.692 | 2.674 | 2.681 | 2.692 |
Fe1–Fe3 | 2.780 | 2.757 | 2.747 | 2.676 | 2.656 | 2.643 | 2.641 |
Fe1–Fe4 | 2.820 | 2.752 | 2.728 | 2.672 | 2.658 | 2.645 | 2.631 |
Fe2–Fe3 | 2.717 | 2.764 | 2.762 | 2.752 | 2.738 | 2.797 | 2.797 |
Fe2–Fe4 | 2.694 | 2.767 | 2.770 | 2.729 | 2.723 | 2.729 | 2.730 |
Fe3–Fe4 | 2.749 | 2.751 | 2.755 | 2.719 | 2.720 | 2.722 | 2.725 |
For comparison, the corresponding bond lengths from the IspH:HMBPP crystal structure are given.32