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. 2014 Sep 9;9(9):e107132. doi: 10.1371/journal.pone.0107132

Figure 4. Evolutionary relationships of ASCV with members of the family Caliciviridae.

Figure 4

Phylogenetic analysis was based on sequence regions encompassing the capsid or putative capsid of representatives of the five known genera of caliciviruses, suggested new genera and unassigned published viruses. Selected sequences were obtained from GenBank and present study and Neighbor-joining analysis was performed with 1000 bootstrap replicates, as described in Materials and Methods. Members of the family Caliciviridae included in the tree are as follows: Vesicular exanthema of swine virus (VESV) serotype A48 (NP786889); Steller sea lion vesivirus V810 (ABP88255); VESV-like calicivirus Pan-1 (AAC61759); San Miguel sea lion (SMSV) serotype 1 (AAG13639); Walrus calicivirus (NP786921); Feline calicivirus (FCV) Urbana (NP78331); Feline calicivirus (FCV) F9 (from AAA79327); Canine calicivirus (NP786912); European brown hare syndrome virus (EBHSV) GD (from CAA93445); Rabbit hemorrhagic disease virus (RHDV) FRG (NP740333); Newbury agent 1 (from YP529550); Calicivirus strain NB (AAT35531); Bat sapovirus (Bat-SaV) TLC58-HK (from AFJ39355); Porcine enteric sapovirus (PEC) Cowden (from NP051035); Sapovirus (SaV) Mc10 (YP052971); Sapovirus (SaV) Manchester (CAA60262); Calicivirus chicken Bavaria04V0021 (from ADN88287); Snow Mountain virus (AAN08112); Lordsdale virus (CAA60255); Southampton virus (AAA92984); Tulane virus (ACB38132); St Valerién calicivirus AB90 (from ACQ44559). Only bootstrap values of 60% and above have been displayed in the output.