Table 2. Pairwise comparison of capsid amino acid sequences.
ASCV | ||
field strain | cell culture isolate | |
Vesivirus | ||
Vesicular exanthema of swine virus A48 | 12,35 | 12,37 |
Steller sea lion vesivirus V810 | 10,46 | 10,11 |
VESV-like calicivirus Pan-1 | 10,54 | 10,43 |
San Miguel sea lion serotype 1 | 10,23 | 9,76 |
Walrus calicivirus | 12,05 | 11,35 |
Feline calicivirus Urbana | 11,22 | 11,97 |
Feline calicivirus F9 | 11,08 | 11,39 |
Lagovirus | ||
European brown hare syndrome virus GD | 13,44 | 13,91 |
Rabbit hemorrhagic disease virus FRG | 13,38 | 13,70 |
Nebovirus | ||
Newbury agent 1 | 11,32 | 11,34 |
Calicivirus strain NB | 11,18 | 11,34 |
Sapovirus | ||
Bat sapovirus TLC58-HK | 14,41 | 12,67 |
Porcine enteric sapovirus Cowden | 12,79 | 13,55 |
Sapovirus Mc10 | 14,10 | 14,41 |
Sapovirus Manchester | 12,95 | 12,97 |
Norovirus | ||
Snow Mountain virus | 14,84 | 14,71 |
Lordsdale virus | 15,14 | 14,86 |
Southampton virus | 14,18 | 14,35 |
Unassigned | ||
Canine calicivirus | 10,96 | 10,83 |
Calicivirus chicken Bavaria04V0021 | 11,88 | 12,33 |
Tulane virus | 13,59 | 14,20 |
St Valerién calicivirus AB90 | 14,26 | 14,59 |
ASCV field strain | - | 82,33 |
ASCV cell culture isolate | 82,33 | - |
Percent identity between capsid amino acid sequences of selected caliciviruses used in phylogenetic tree (Fig. 4) and putative capsid sequence of field strain and cell culture isolate of ASCV.