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. 2014 Sep 9;9(9):e107349. doi: 10.1371/journal.pone.0107349

Figure 2. Recombination and phylogenetic reanalysis of CRF08_BC.

Figure 2

(A) Genome maps of CRF08_BC from different sources. The first mosaic structure in the panel is from the Los Alamos HIV database. The second is from jpHMM. The third is from RDP3. The standard representatives are marked with different colors, as indicated. (B) Phylogenetic relationship of the region spanning HXB2 nt 9027–9417 in nef with the representatives of the major HIV-1 (group M) subtypes based on newly inferred mosaic structure. The tree was constructed using the maximum likelihood method implemented in Mega 5. Bootstrap support values of ≥70% are considered to be significant.