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| Method of recombination analysis | Segment assignment and breakpoint positions of CRF08_BC | ||
| Simplot | B1: 1234 1680 | B2: 2853 3149 | B3: 8797 9417 |
| jphMM | - | 2842 3177 | 8864 9026 |
| RDP3 | 1325 1649 | 2908 3171 | 8849 9002 |
| RDP3 plus original reference sequences | 1268 1641 | 2866 3171 | 8869 9028 |
-indicates that the segment was not detected using this method.
