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. Author manuscript; available in PMC: 2014 Sep 9.
Published in final edited form as: Am J Surg Pathol. 2013 Jun;37(6):796–803. doi: 10.1097/PAS.0b013e31827ad9b2

FIGURE 2.

FIGURE 2

Split screen for fusion spanning pairs of SS18 and SS1 in sample SS_16. Gray reads represent paired reads that both map to the same transcript, either SS18 (arrows A) or SSX1. The black reads in SS18 window are paired with the tan reads in SSX1 window (arrows B). Notably, there are no reads 5′ to the breakpoint in SSX1, which suggests that the unaffected allele is not expressed. There is some expression of the unaffected SS18 as demonstrated by some reads continuing to map 3′ to the breakpoint. The read coverage is displayed above.