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. 2014 May 22;13(9):2213–2232. doi: 10.1074/mcp.M113.037085

Table II. Established target gene primers and reference genes. Comprehensive list of primers used for quantitative RT-qPCR and parameters providing efficiency (E) and correlation coefficient (R2) for each primer pair on target and reference genes applied in this study. Reference genes were established by Jacob et al. (2013) (44).

Symbol Gene name Accession number Chromosomal location Forward primer 5′-3′ Reverse primer 5′-3′ E in % R2
MGAT3 mannosyl (β-1,4-)-glycoprotein β-1,4-N-acetylglucosaminyl transferase NM_002409.4 22q13.1 GGGATGAAGATGAGACGCTACAAG AGGACAGGGTCTTGAAGAAGTGC 114.3 0.985
ST6GAL1 β-galactosamide α-2,6-sialyltransferase 1 NM_173217.2 3q27-q28b CCATCCTCTGGGATGCTTGGTATC ACGTCAGTCTTGCGCTTGGATG 102.9 0.991
ST3GAL1 β-galactoside α-2,3-sialyltransferase 1 NM_173344.2 8q24.22 AGTCACGACTTTGTCCTCAGGATG TGGTCTTGGTCCCAACATCAGC 83.3 0.981
ST3GAL2 β-galactoside α-2,3-sialyltransferase 2 NM_006927.3 16q22.1 GCATGTGTGTGATGAGGTGAACG TTCTCCCAGTAGTGGTGCCAGTTG 102.6 0.999
ST3GAL3 β-galactoside α-2,3-sialyltransferase 3 NM_174963 1p34.1 AGTGGCAGGACTTTAAGTGGTTG AGAAGCCATCCGATGCACTCAC 91.4 0.963
ST3GAL4 β-galactoside α-2,3-sialyltransferase 4 NM_006278.2 11q24.2 CAGCCACGGAAGATTAAGCAGAAG GCAATGTGCACCAAGTCACAGAG 111.8 0.999
ST3GAL5 β-galactoside α-2,3-sialyltransferase 5 NM_001042437.1 2p11.2 TGTGGACCCTGACCATGTAAAGAG TGGCAAACTTGGGACGACATTCC 103.6 0.995
FUT2 α1–2 fucosyltransferase 2 NM_000511.5 19q13.3 TCACCGATGCTGGAAGGGTTTC AACGACCAGCATGGCTTCTCTC 118.2 0.992
FUT3 α1–3/4 fucosyltransferase 3 NM_001097640.1 19p13.3 TCAGACAGGTCCAAGTTCAAGCC TTACAGTCGATCCCACCTGTACCC 107.8 0.997
FUT4 α1–3 fucosyltransferase 4 NM_002033.3 11q21 TTTACCGAGGAAGGAGCCAAGG GCTGGTTCTGCCACTGCTATTG 100.0 0.999
FUT5 α1–3 fucosyltransferase 5 NM_002034.2 19p13.3 TGCATCACTATGGGTGTGACCTC TGAGGCATCGCAACACATCCAC 120.5 0.952
FUT8 α1–6 fucosyltransferase 8 NM_178155 14q24.3 GGCCTGTAAGTGAGACATGCAC TTTGTCCTTCACTTCACCTGACC 89.4 0.998
FUT9 α1–3 fucosyltransferase 9 NM_006581.3 6q16 TGGCCTCATTAGCCACCTTCAG TGGACAAGGATGGCATCTTCAGG 93.1 0.987
B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1 NM_001478.3 12q13.3 GAGCCTTCAGGCAGCTTCT CCTAGGGAGGCAGTCAGGTT 98.1 0.910
B4GALNT3 beta-1,4-N-acetyl-galactosaminyl transferase 3 NM_173593.3 12p13.33 TGGCATAGACCTCGTGAAGGAC ACAGTGCTTCCGAATGGCATC 100.4 0.998
B3GALNT1 beta-1,3-N-acetyl-galactosaminyltransferase 1 NM_003781.3 3q25 TGCTCTATCACGTGGTGCTCTC ACGCGAGCCGAAGGTTCTTTAC 116.8 0.997
B3GALNT2 beta-1,3-N-acetyl-galactosaminyltransferase 2 NM_152490.2 1q42.3 TGCCTTACTGAAGGAGGAAAGCAG AGCTCGTTGTTTCCACAGTCCATC 106.3 0.986
HSPCB Heat shock protein 90 kDa alpha (cytosolic) NM_007355 6p12 TCTGGGTATCGGAAAGCAAGCC GTGCACTTCCTCAGGCATCTTG 103.1 0.998
YWHAZ Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide NM_003406 8q23.1 ACTTTTGGTACATTGTGGCTTCAA CCGCCAGGACAAACCAGTAT 101.2 0.998
SDHA Succinate dehydrogenase complex, subunit A NM_004168 5p15 TGGGAACAAGAGGGCATCTG CCACCACTGCATCAAATTCATG 105.6 0.994