Table I. Performance of ProLuCID, Mod-A, and PepExplorer on the four PFU datasets. The first number represents the number of proteins having at least two spectral counts identified under a 1% FDR. The number in parentheses is the average sequence coverage.
| Number of proteins (Average Coverage) |
||||
|---|---|---|---|---|
| PFU | PFU_Gap_25_Substitution_15 | PFU_Gap_20_Substitution_10 | PFU_Gap_15_Substitution_8 | |
| ProLuCID | 585 (0.16) | 45 (0.04) | 7 (0.04) | 0 |
| Mod-A | 499 (0.16) | 63 (0.06) | 45 (0.05) | 0 |
| PepExplorer | 311 (0.17) | 190 (0.17) | 143 (0.17) | 102 (0.17) |