Table 2.

Bacterial pathogens identified in the WHT and WLT samples from the FASFL.

Bacterial Pathogen a	Disease	Source		RAS (%) b
		Environment	Main Hosts	WHT	WLT
Aeromonas hydrophila	Motile aeromonads septicaemia, cholangitis	Freshwater, brackish water, biosolid	Catfish, carp, trout, eel, sturgeon, tilapia, bass	0.0109	0.0054
Aeromonas caviae	Speticaemia, gastroenteritis, cholangitis	Freshwater, brackish water, soil, biosolid, agricultural products,	Fish, shrimp, frog, soft-shelled turtle	0.0054	0
Aeromonas veronii	Speticaemia, gastroenteritis, cholangitis	Freshwater, biosolid	Human, mosquitos, leeches	0	0.0054
Bacillus anthracis	Anthrax	Natural and processed water sources, sewage, biosolid	Human	0.0054	0.0054
Flavobacterium johnsoniae	False columnaris	Natural water sources, fish cultures	Barramundi	0	0.0054
Mycobacterium avium	Mycobacterium avium complex	Natural water sources, soil, biosolid	Human, farm animals, birds	0.0054	0
Mycobacterium fortuitum	Osteomyelitis	River, lake, tap water, soil, dust, biosolid	Human, cattle, frog, other animals	0.0217	0.0163
Mycobacterium marinum	Mycobacteriosis	Natural water sources, fish cultures	Atlantic salmo, Seabass, turbot	0.0054	0
Serratia marcescens	Conjunctivitis, keratitis, endophthalmitis, tear duct infections	Natural water sources, soil, biosolid	Human, plants, animals	0	0.0109
Pseudomonas anguilliseptica	Pseudomonadiasis, Winter disease	Natural water sources, fish cultures	Human, seabream, eel, turbot, ayu	0.0163	0.0109
Vibrio cholerae	Vibriosis	Natural water sources, fish cultures, biosolid	Human, croaker fish, puffer fish, grouper, cod, shrimp, big-scale sand smelt, flounder, abalone, seabream, salmon, sweetfish, sheatfish, catfish	0	0.0054

^a The bacterial pathogens were reported in literature [35,36,37]; ^b Relative abundance of sequence.