Table 2.

Sequence differences in conserved regions (identified in Figure2B) between Texas surface fish (SF) and Pachón cavefish (CF)

	Conserved sequence	Difference in SF and CF
1	CCCTATAGATCATTTAAAAATCAATTGTTAATTATTGTACTTTTGTCTTTCTATCTTTCTCCCTCT	None
2	GCTGCCCTCTGTTTGCCGTGGCCCTGGGCTCTCTGGGCTGG	None
3	TAAGCCTCTCCAGCGGGCTGCGCAAAAGCCCACAGGGATTACCTTAATGCTGGCCTGCATGTGCCAGAGGGGAAGTCATCGGATGCAGGATCAGGG	None
4	GGTCTGGTTTGTTTTGGCAGAAGATCACTTTCCGGCGGTAGCAGCAGCTGGCAATCGTGCCACTGCCTGAAGCCGTTCAGGGCCAGACTGTCGTCCGCAGGTCAACTGTTCTGCTGACGCTGGTGTTCCCACCATGAGCTAATGCCATTCCAGAAAGATCCCCATGTAAGCCCCTCTTTCTGCCACACAGATATAAAGGCTGGAGGTGGCCAGGGCAGAAGGTAGCACACACCGTCTGCGGATCCCT	None
5	CAGTCATTATGGATATTGCCATCCAGCACCCCTGGTTCCGACGTGCCCTGGGCTATCCATCCCGCCTCTTTGACCAGTTCTTCGGGGAGGGCCTGTTTGACTATGACCTCTTCCCCTACGCCACCTCCACCGTCAGCCCTTATTATCGGTACTCGCTCTTCCGCAACTTCCTGGATTCCTCCAACTCGGGCATGTCTGAGGTAAACAG	Exon1 “AGC” to “AAC”
6	TTTCCTTTGGTTCTTCCCTAGGTGAGGTCTGACAGAGACAAGTTCATGGTCTACCTGGATGTGAAGCACTTCTCCCCCGAGGAACTCAATGTAAAGGTGGCAGAAGACTACGTGGAGATCCAAGGCAAGCATGGGGAGAGACAGGT	Exon2 None
7	AGGATGACCATGGCTACATCTCCCGCGAGTTCCACCGCCGCTACCGCCTGCCCTCCAACGTGGACCAGTCGGCCATCACCTGCACCCTGTCGGCCGATGGTCTGCTCACCATCTGTGGGCCCAAGTCAGGCGGCTCAGAGAGCGGCCGTGGAGACCGCAGCATTCCTGTCACCCGTGACGACAAGACTAACTCTACCCCCTcCTCTTAGGCCGCCTCAT	Exon3 None
8	CCTGTCCTGTAGCCTCTAGTTCTACTTATA	None
9	CACCTTTGCTAGTTTGCTAAAAAGAAATTAA	None
10	CCATCTCAACTCAAGGCTGAAGTCAAACCT	None