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. 2014 Sep 11;5:461. doi: 10.3389/fpls.2014.00461

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Copyright © 2014 Joseph, Atwell, Corwin, Li and Kliebenstein.

This is an open-access article distributed under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/(CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Comparison of SNP distributions in the recombinant inbred line (RIL) populations. We obtained previously published single nucleotide polymorphism calls between the four genotypes, Bay, Sha, Kas, and Tsu. Using this data, we estimated the distribution of SNPs on chromosomes 1–5 (top to bottom) based on a sliding window of 250 Kb along the chromosome. The frequency is shown as the fraction of polymorphisms per 100 bp between the two parents for BayxSha (green) and KasxTsu (blue) RIL populations.