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SNP phylogeny from whole genomes from VGIIc isolates. Maximum-parsimony phylogenetic analysis was performed on all isolate genomes within VGIIc. The VGIIc tree includes 246 SNPs (55 parsimony informative) from 25 isolates (CI = 1.0). For state abbreviations, see the legend to Fig. 1. Numbers in black on top of branches are SNP length, and numbers in red next to branches are the bootstrap values generated from 500 generations.
