TABLE 2 .
BLAT score ratio gene content comparison
| Gene content similarity and is-cDNA | Family hit(s) | Pfam | E value(s) |
|---|---|---|---|
| Present in PNW VGIIa/c | |||
| is-cDNA 1 | Transmembrane amino acid transporter protein family | PF01490.13 | 1.90E−33 |
| is-cDNA 2 | Endoribonuclease L-PSP | PF01042.16 | 8.30E−39 |
| is-cDNA 3 | Aminotransferase class I and II domain | PF00155.16 | 5.20E−47 |
| is-cDNA 4 | No significant matches | ||
| is-cDNA 5 | Zinc finger double domain, fungus-specific transcription factor domain | PF13465.1, PF04082.13 | 4.4E−7, 2.3E−16 |
| is-cDNA 6 | Major facilitator superfamily | PF07690.11 | 5.80E−11 |
| is-cDNA 7 | Peptidase family M20/M25/M40, peptidase dimerization domain | PF01546.23, PF07687.9 | 3E−6, 4.2E−9 |
| is-cDNA 8 | Major facilitator superfamily, fungus-specific transcription factor domain | PF07690.11, PF04082.13 | 5.5E−29, 9.6E−12 |
| is-cDNA 9 | No significant matches | ||
| is-cDNA 10 | Arylsulfotransferase (ASST) family | PF14269.1 | 9.90E−14 |
| is-cDNA 11 | Major facilitator superfamily | PF07690.11 | 7.20E−23 |
| is-cDNA 12 | Phosphatidylethanolamine-binding protein domain | PF01161.15 | 5.70E−18 |
| is-cDNA 13 | Fungus-specific transcription factor domain | PF04082.13 | 2.90E−05 |
| is-cDNA 14 | Glycosyl hydrolase family 32 N-terminal domain, glycosyl hydrolase family 32 C-terminal domain | PF00251.15, PF08244.7 | 1.8E−51 4.8E−10 |
| is-cDNA 15 | No significant matches | ||
| is-cDNA 16 | Alcohol dehydrogenase GroES-like domain, zinc-binding dehydrogenase | PF08240.7, PF13602.1 | 8.5E−6, 2.8E−19 |
| is-cDNA 17 | No significant matches | ||
| Present in PNW VGIIb | |||
| is-cDNA 18 | E1-E2 ATPase, haloacid dehalogenase-like hydrolase | 3.6E−47, 3.1E−21 | |
| is-cDNA 19 | No significant matches | ||
| is-cDNA 20 | No significant matches | ||
| Present in PNW VGIIa | |||
| is-cDNA 21 | Sugar (and other) transporter | PF00083.19 | 1.20E−94 |
| is-cDNA 22 | Alcohol dehydrogenase GroES-like domain, zinc-binding dehydrogenase | PF08240.7, PF00107.21 | 1.6E−28, 1.6E−16 |
| is-cDNA 23 | Major facilitator superfamily | PF07690.11 | 1.20E−17 |
| is-cDNA 24 | No significant matches | ||
| is-cDNA 25 | Aldo/keto reductase family | PF00248.16 | 1.30E−52 |
| is-cDNA 26 | Protein of unknown function, putative collagen-binding domain of a collagenase | PF13204.1, PF12904.2 | 2.1E−54, 7.4E−19 |
| is-cDNA 27 | Sugar (and other) transporter | PF00083.19 | 3.70E−93 |
| is-cDNA 28 | Alcohol dehydrogenase GroES-like domain, zinc-binding dehydrogenase | PF08240.7, PF00107.21 | 5.3E−28, 1.2E−15 |
| is-cDNA 29 | Fungus-specific transcription factor domain, fungal Zn(2)-Cys(6) binuclear cluster domain | PF04082.13, PF00172.13 | 2E−16, 1.8E−4 |
| is-cDNA 30 | No significant matches | ||
| is-cDNA 31 | No significant matches | ||
| is-cDNA 32 | Aspartyl protease | PF09668.5 | 3.30E−05 |
| is-cDNA 33 | Helicase conserved C-terminal domain, DEAD/DEAH box helicase | PF00271.26, PF00270.24 | 4.6E−7, 1E−4 |
| Present in PNW VGIIc | |||
| is-cDNA 34 | Fungus-specific transcription factor domain | PF04082.13 | 2.50E−11 |
| is-cDNA 35 | Lyase, adenylosuccinate lyase C terminus | PF00206.15, PF10397.4 | 1.5E−47, 2.6E−18 |
| is-cDNA 36 | Sugar (and other) transporter | PF00083.19 | 5.40E−80 |
| is-cDNA 37 | No significant matches | ||
| is-cDNA 38 | No significant matches | ||
| is-cDNA 39 | Protein of unknown function | PF11175.3 | 1.40E−80 |
| is-cDNA 40 | Sugar (and other) transporter | PF00083.19 | 8.30E−63 |
| is-cDNA 41 | Protein of unknown function | PF11175.3 | 6.70E−83 |
| is-cDNA 42 | No significant matches | ||
| is-cDNA 43 | No significant matches | ||
| Present in PNW VGIIa/b/c and missing in half of VGII STs | |||
| is-cDNA 44 | Glycosyl hydrolase family 3 N-terminal domain, fibronectin type III-like domain | PF00933, PF14310 | 1.9E−70,7.5E−20 |
| is-cDNA 45 | Alpha-l-rhamnosidase N-terminal domain, bacterial alpha-l-rhamnosidase | PF08531, PF05592 | 04.7E−36, 9.5E−166 |
| is-cDNA 46 | Sugar (and other) transporter | PF00083 | 2.00E−57 |
| is-cDNA 47 | No significant matches | ||
| Missing in PNW and present in half of VGII STs | |||
| is-cDNA 48 | Fungus-specific transcription factor domain | PF04082.13 | 1.90E−23 |
| is-cDNA 49 | Proline dehydrogenase | PF01619.13 | 4.60E−31 |
| is-cDNA 50 | Transmembrane amino acid transporter protein | PF01490.13 | 2.8E−17, 1E−9 |