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. 2014 Aug 27;15(1):289. doi: 10.1186/1471-2105-15-289

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© Wang; licensee BioMed Central Ltd. 2014

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Predicted binding energy matrices for Egr1 and Hnf4a. A and B are predicted PBEMs for Egr1 and Hnf4a, respectively, by BayesPI2 energy-independent model. C and D are predicted PBMEs for Egr1 and Hnf4a, respectively, by BayesPI2 energy-dependent model including dinucleotide interdependence. Figure 4E and 4F are predicted energy-dependent matrices of dinucleotide interactions (i.e. where is the dinucleotide-dependent energy correction) for Egr1 and Hnf4a, respectively, by BayesPI2 energy-dependent model. In E and F, the dark and the light gray color represent the high and the low binding energy-level, respectively.

Inline graphic — Predicted binding energy matrices for Egr1 and Hnf4a. A and B are predicted PBEMs for Egr1 and Hnf4a, respectively, by BayesPI2 energy-independent model. C and D are predicted PBMEs for Egr1 and Hnf4a, respectively, by BayesPI2 energy-dependent model including dinucleotide interdependence. Figure 4E and 4F are predicted energy-dependent matrices of dinucleotide interactions (i.e. where is the dinucleotide-dependent energy correction) for Egr1 and Hnf4a, respectively, by BayesPI2 energy-dependent model. In E and F, the dark and the light gray color represent the high and the low binding energy-level, respectively.