Table 3.
Negative log likelihoods for different CodeML models and P values of LRT tests comparing various models
| -Ln(likelihood) | P | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NsitesM0 | NsitesM1 | NsitesM2 | NsitesM7 | NsitesM8 | CmC | M2a_Rel | MAalt | MAnull | M1a-vs-M2a | M7-vsM8 | CmC-vs-M2a_rel | MAalt-vs-M1a | MAalt-vs-MAnull | |
| All OBPs | 43061.9 | 42980.1 | 42980.1 | 42629.2 | 42628.0 | 42600.1 | 42724.8 | 1 | 0.201 | < 0.001 | ||||
| All CSPs | 26669.8 | 26491.3 | 26491.2 | 26174.2 | 26171.9 | 26200.1 | 26257.7 | 1 | 0.086 | < 0.001 | ||||
| PG2 OBPs | 17839.3 | 17663.0 | 17658.7 | 17579.6 | 17576.2 | 42772.8 | 42772.8 | 0.02 | 0.04 | < 0.001 | 1 | |||
| PG1 OBPs | 4397.4 | 4355.7 | 4355.7 | 4353.8 | 4351.6 | 42918.3 | 42918.3 | 1 | 0.09 | < 0.001 | 1 | |||
| 59a OBPs | 4406.6 | 4357.1 | 4357.1 | 4337.3 | 4337.3 | 42975.9 | 42975.9 | 1 | 1 | 0.059 | 1 | |||
| SCG OPBs | 15337.6 | 15319.7 | 15319.7 | 15147.7 | 15147.7 | 42955.1 | 42955.1 | 1 | 1 | < 0.001 | 1 | |||
| AEG CSPs | 13000.5 | 12759.8 | 12754.0 | 12651.3 | 12645.5 | 26295.9 | 26295.9 | 0.009 | 0.009 | < 0.001 | 1 | |||
| SCG CSPs | 13710.2 | 13597.0 | 13597.0 | 13436.5 | 13434.4 | 26437.5 | 26437.5 | 1 | 0.1 | < 0.001 | 1 | |||
PG1: paralog group 1, PG2: paralog group 2, 59a: Obp59a group, SCG: single-copy orthology group, AEG: ant expansions group.