TABLE 3.
KshAMtb·ADD | A5·ADD | A5·1,4-BNCCoA | A5/A1·1,4-BNC-CoA | |
---|---|---|---|---|
Data collection | ||||
Wavelength (Å) | 0.92 | 0.92 | 0.98 | 0.98 |
Space group | P32 | P63 | P63 | F23 |
Cell dimensions | ||||
a, b, c (Å) | 115.8, 115.8, 80.81 | 162.2, 162.2, 46.97 | 163.18, 163.18, 47.09 | 273.6, 273.6, 273.6 |
α, β, γ (°) | 90, 90, 120 | 90, 90, 120 | 90, 90, 120 | 90, 90, 90 |
Resolution (Å) | 47.07–2.46(2.52–2.46) | 46.82–1.92(1.97–1.92) | 53.41–2.6(2.74–2.6) | 68.41–2.45(2.52–2.45) |
Rsyma | 0.161(1.15) | 0.124(1.318) | 0.244(1.278) | 0.176(1.524) |
Rpimb | 0.071(0.582) | 0.043(0.494) | 0.101(0.551) | 0.067(0.586) |
CC1/2 | 0.997(0.412) | 0.999(0.453) | 0.983(0.197) | 0.998(0.536) |
I /σI | 13.77(1.61) | 18(2.0) | 7.1(1.5) | 12.6(2.0) |
Completeness (%) | 99.95(99.87) | 88.1(88.1) | 100(100) | 100(100) |
Redundancy | 9.7(9.4) | 9.3(7.9) | 6.7(6.2) | 14.7(14.3) |
Refinement | ||||
Resolution (Å) | 2.46 | 1.92 | 2.6 | 2.45 |
No. of reflections (unique) | 23062(1502) | 49275(1620) | 22485(3248) | 64010(4518) |
Rworkc/Rfreed | 0.177/0.235 | 0.187/0.217 | 0.225/0.256 | 0.185/0.214 |
No. of atoms | ||||
Protein | 2900 | 2986 | 2959 | 5828 |
Ligand/ion | 31 | 50 | 37 | 60 |
Water | 128 | 276 | 23 | 201 |
B-factors | ||||
Protein | 47.4 | 29.7 | 51.5 | 49.8 |
Ligand/ion | 40.2 | 37.3 | 57.4 | 71.1 |
Water | 41.0 | 35.9 | 39.5 | 43.0 |
r.m.s.d. | ||||
Bond lengths (Å) | 0.007 | 0.141 | 0.007 | 0.008 |
Bond angles (°) | 1.266 | 1.680 | 0.966 | 1.256 |
Ramachandran plot | ||||
Outliers | 0.00% | 0.54% | 0.83% | 0.14% |
Allowed | 1.99% | 1.63% | 5.80% | 2.81% |
Favored | 98.01% | 97.83% | 93.37% | 97.05% |
a Rsym = ΣhΣl|Ihl − 〈Ih〉|/ΣhΣl〈Ih〉.
b Rpim = Σh/(nh − 1)Σl|Ihl − 〈Ih〉|/ΣhΣl〈Ih〉.
c Rwork = Σ‖Fo| − |Fc‖/Σ|Fo|, where Fo and Fc represent the observed and calculated structure factors, respectively.
d Rfree is the Rwork value for 5% of the reflections excluded from the refinement.