Table 1.
Spatial reference system core characteristics for the mouse atlases currently registered in DAI.
| Code | Name | SRS family | Version | Species | SRS description |
|---|---|---|---|---|---|
| INCF:0001 | Mouse_WHS_0.9 | WHS | 0.9 | Mouse | WHS initial version, with origin in the back-left-bottom corner |
| INCF:0002 | Mouse_WHS_1.0 | WHS | 1.0 | Mouse | WHS with origin shifted to the intersection of midline and the center of anterior commissure |
| INCF:0100 | Mouse_ABAvoxel_1.0 | ABAvoxel | 1.0 | Mouse | SRS used in the Allen Mouse Brain Atlas 3D model (circa 2005) |
| INCF:0101 | Mouse_ABAreference_1.0 | ABAreference | 1.0 | Mouse | SRS in the Allen Mouse Brain Atlas reference atlas |
| INCF:0102 | Mouse_AGEA_1.0 | AGEA | 1.0 | Mouse | SRS used in the Allen Mouse Brain Atlas gene expression module, a derivative of ABAvoxel |
| INCF:0200 | Mouse_Paxinos_1.0 | Paxinos | 1.0 | Mouse | SRS in the Paxinos and Franklin (2001) stereotaxic atlas of the mouse brain |
| INCF:0300 | Mouse_EMAP-T23_1.0 | EMAP-T23 | 1.0 | Mouse | A T23 model of EMAP developing mouse atlas |