Table 2. PCR Primer pairs for amplification of the TYR gene in OCA1 patients.
Gene name | Primer name | Exon | Locus (nDNA) | Primer sequence (5′ to 3′) | Amplicon size (bp) | Temperature (°C) |
TYR | AL-1-1F | 1–1* | 88910556 | CAAACTGAAATTCAATAACATATAAGG | 678 | 59 |
TYR | AL-1-1R | 88911233 | GTGGACAGCATTCCTTCTCC | |||
TYR | AL-1-2F | 1–2* | 88910948 | TTCAGAGGATGAAAGCTTAAGATAAA | 521 | 59 |
TYR | AL-1-2R | 88911468 | CGTCTCTCTGTGCAGTTTGG | |||
TYR | AL-1-3F | 1–3* | 88911171 | CTGGCCATTTCCCTAGAGC | 605 | 60 |
TYR | AL-1-3R | 88911775 | CCACCGCAACAAGAAGAGTC | |||
TYR | AL-1-4F | 1–4* | 88911487 | CATCTTCGATTTGAGTGCCC | 521 | 59 |
TYR | AL-1-4R | 88912007 | CCCTGCCTGAAGAAGTGATT | |||
TYR | AL-2F | 2 | 88924298 | CCAACATTTCTGCCTTCTCC | 442 | 60 |
TYR | AL-2R | 88924739 | TCAGCTAGGGTCATTGTCGAT | |||
TYR | AL-3F | 3 | 88960909 | AGTTATAAATCAAATGGGATAATCA | 296 | 56 |
TYR | AL-3R | 88961204 | ACATTTGATAGGCACCCTCT | |||
TYR | AL-4F | 4 | 89017552 | CTGTTTCCAATTTAGTTTTATAC | 790 | 56 |
TYR | AL-4R | 89018341 | TACAAAATGGCCTATGTTAAGC | |||
TYR | AL-5F | 5 | 89028218 | TGTCTACTCCAAAGGACTGT | 924 | 55 |
TYR | AL-5R | 89029138 | GGCACTTAGCTGGATGTGTT |
*Shows that due to the large size of exon 1, it is divided into four overlapping fragments.