Table 3. Differentially expressed genes (FDR<0.05), when comparing systemic tissue of H. oryzae infected plants with uninfected plants at both time points (3 and 7 dpi).
| Gene_ID | Annotation | Log2FC (shoots of infectedversus uninfected plants) | FDR |
| RNSR_1.36318 | No Description | –3.58 | 0.02 |
| LOC_Os05g34270 | inactive receptor kinase At1g27190precursor, putative, expressed | –2.00 | 0.01 |
| LOC_Os12g29670 | expressed protein | –1.93 | 0.03 |
| LOC_Os01g62950 | ras-related protein, putative, expressed | –1.85 | 0.02 |
| LOC_Os06g05130 | myristoyl-acyl carrier proteinthioesterase, chloroplast precursor,putative, expressed | –1.83 | 0.04 |
| LOC_Os05g36290 | actin, putative, expressed | –1.73 | 0.01 |
| LOC_Os10g02350 | transmembrane 9 superfamilymember, putative, expressed | –1.71 | 0.05 |
| LOC_Os01g54940 | dehydrogenase, putative, expressed | –1.69 | 0.01 |
| LOC_Os06g07630 | 26S protease regulatory subunit6A, putative, expressed | –1.68 | 0.04 |
| LOC_Os03g52040 | OsSCP19 - Putative SerineCarboxypeptidase homologue, expressed | –1.65 | 0.04 |
| LOC_Os02g36330 | RING-H2 finger proteinATL1O, putative, expressed | –1.60 | 0.02 |
| RNSR_1.55235 | No Description | –1.55 | 0.03 |
| LOC_Os04g48750 | 3-oxo-5-alpha-steroid4-dehydrogenase, putative, expressed | –1.51 | 0.05 |
| RNSR_1.61315 | No Description | –1.50 | 0.03 |
| LOC_Os02g52010 | phosphate-induced protein 1conserved region domaincontaining protein, expressed | –1.43 | 0.04 |
| LOC_Os01g07950 | OsGrx_S15.2 – glutaredoxinsubgroup II, expressed | –1.39 | 0.02 |
| RNSR_1.28714 | No Description | –1.35 | 0.01 |
| LOC_Os02g38810 | 26S proteasome non-ATPaseregulatory subunit 6,putative, expressed | –1.34 | 0.04 |
| LOC_Os04g56510 | ABC1 family domain containingprotein, putative, expressed | –1.28 | 0.03 |
| LOC_Os02g46839 | expressed protein | –1.14 | 0.04 |
| LOC_Os02g56900 | thioredoxin family protein,putative, expressed | –1.09 | 0.02 |
| LOC_Os04g33600 | hydrolase, alpha/beta foldfamily protein, putative, expressed | –1.08 | 0.02 |
| LOC_Os05g45040 | OsFBX170 - F-box domaincontaining protein, expressed | –1.01 | 0.03 |
| LOC_Os01g37700 | expressed protein | –0.88 | 0.04 |
| LOC_Os01g39310 | SEY1, putative, expressed | –0.67 | 0.04 |
| LOC_Os10g28580 | CAF1 family ribonucleasecontaining protein, expressed | 0.52 | 0.03 |
| LOC_Os10g22300 | resistance protein,putative, expressed | 0.59 | 0.03 |
| RNSR_1.47341 | No Description | 0.77 | 0.03 |
| RNSR_1.30534 | No Description | 0.82 | 0.03 |
| RNSR_1.4486 | No Description | 0.82 | 0.04 |
| RNSR_1.42503 | No Description | 0.84 | 0.01 |
| LOC_Os05g31420 | GRAS family transcriptionfactor containing protein, expressed | 0.88 | 0.04 |
| RNSR_1.27029 | No Description | 0.95 | 0.01 |
| LOC_Os06g45460 | OsFBX202 - F-box domaincontaining protein, expressed | 0.97 | 0.04 |
| LOC_Os09g31450 | polygalacturonase inhibitor 1precursor, putative, expressed | 0.97 | 0.03 |
| LOC_Os05g40570 | expressed protein | 0.99 | 0.04 |
| LOC_Os01g67030 | auxin-responsive protein,putative, expressed | 1.02 | 0.02 |
| LOC_Os03g48590 | protein transport proteinSec61 subunit alpha,putative, expressed | 1.03 | 0.05 |
| LOC_Os02g33840 | OsFBX52 - F-box domaincontaining protein, expressed | 1.08 | 0.03 |
| LOC_Os01g41140 | THION18 - Plant thioninfamily protein precursor, expressed | 1.14 | 0.01 |
| LOC_Os04g41070 | zinc finger, C3HC4 typedomain containing protein, expressed | 1.16 | 0.02 |
| LOC_Os12g09630 | expressed protein | 1.20 | 0.03 |
| LOC_Os05g10300 | expressed protein | 1.25 | 0.03 |
| LOC_Os08g04740 | expressed protein | 1.26 | 0.04 |
| LOC_Os03g42259 | hypervariable Bacillus group-specificprotein, putative, expressed | 1.30 | 0.05 |
| LOC_Os07g39450 | expressed protein | 1.32 | 0.04 |
| LOC_Os05g08580 | hypothetical protein | 1.33 | 0.02 |
| LOC_Os05g49010 | AP2 domain containingprotein, expressed | 1.35 | 0.05 |
| RNSR_1.17134 | No Description | 1.38 | 0.01 |
| LOC_Os10g23840 | conserved hypothetical protein | 1.58 | 0.02 |
| LOC_Os11g42290 | transferase family protein,putative, expressed | 1.64 | 0.04 |
| LOC_Os09g20470 | hypothetical protein | 1.71 | 0.02 |
| LOC_Os03g58990 | cupin domain containingprotein, expressed | 1.75 | 0.03 |
| LOC_Os04g02470 | expressed protein | 1.75 | 0.03 |
| LOC_Os04g18650 | AP2 domain containingprotein, expressed | 1.87 | 0.01 |
| LOC_Os12g10370 | expressed protein | 1.97 | 0.02 |
| LOC_Os03g31280 | expressed protein | 1.98 | 0.02 |
| LOC_Os08g02200 | expressed protein | 2.02 | 0.01 |
| LOC_Os06g08270 | expressed protein | 2.03 | 0.05 |
| LOC_Os02g32310 | expressed protein | 2.27 | 0.05 |
| LOC_Os12g13540 | hypothetical protein | 2.36 | 0.03 |
| RNSR_1.34363 | No Description | 2.46 | 0.03 |
| RNSR_1.11099 | No Description | 2.54 | 0.04 |
| LOC_Os12g27040 | expressed protein | 2.58 | 0.02 |
The table shows the rice locus number, the annotation (MSU7.0), the Log2 of the fold-change (FC) of infected versus uninfected shoot tissue and the FDR-value. Novel transcriptionally active regions received a gene ID starting with RNSR. FDR: false discovery rate. RNSR: Root Nematode Systemic Respons.