Table 1.
Locus | Accession # | Repeat motif | Primer sequences (5′ – 3′) | MgCl 2/P FR | Ta (°C) | Size (bp) | N | N A | H O | H E | HWE | P NULL |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Hr1 | KM370156 | (GATA)13 | F:TGGCAAGGTTAACACGAACC | 2.0 mM/0.5 μM | 60-50 | 238-258 | 38 | 6 | 0.74 | 0.79 | ns | 0.028 |
R:TCTCCCTCCCGCTCTTATCT | ||||||||||||
Hr2 | KM370157 | (TCTT)15 | F:GAAGCACTGCTGGAAAGGTT | 2.0 mM/0.25 μM | 60-50 | 311-339 | 34 | 8 | 0.77 | 0.76 | ns | -0.009 |
R:GTTGAACTGGGTGGCCTTTA | ||||||||||||
Hr5 | KM370160 | (GAAG)14 | F:TGGGTGTTTCAGTTTCATGC | 2.0 mM/0.5 μM | 65-55 | 186-234 | 34 | 9 | 0.82 | 0.82 | ns | -0.006 |
R:TGGTCTATTTGTTTCCTTCCGTA | ||||||||||||
Hr6 | KM370161 | (TCTT)13 | F:GGGTTTCTTCAAATGTGTTTTC | 2.0 mM/0.5 μM | 55-47 | 204-240 | 37 | 8 | 0.70 | 0.73 | ns | 0.012 |
R:GCCTCCAAGACAAACAGAGG | ||||||||||||
Hr7 | KM370162 | (ATTT)11 | F:AGCCAATGACAAGACTGCCTA | 2.0 mM/0.5 μM | 65-55 | 144-172 | 33 | 8 | 0.42 | 0.68 | *** | 0.173 |
R:CCAGTGAAGCAACGTCCTCT | ||||||||||||
Hr8 | KM370163 | (ATCT)12 | F:CTCAGCCCAAAGTCAAGGAG | 2.0 mM/0.5 μM | 60-50 | 221-241 | 36 | 6 | 0.72 | 0.68 | ns | -0.042 |
R:TGGCTATACGAATACAAAGATTAGACA | ||||||||||||
Hr9 | KM370164 | (TCTA)12 | F:TGCTATCTTCCATGAGGTCAGA | 2.0 mM/0.5 μM | 60-50 | 218-234 | 38 | 5 | 0.63 | 0.73 | ns | 0.061 |
R:TCTCTGTTGCTGAAGGAAAACTT | ||||||||||||
Hr10 | KM370165 | (TTAT)11 | F:TCCACTGGAGTAAGAGATGTGTG | 2.0 mM/1.0 μM | 65-55 | 258-282 | 38 | 7 | 0.79 | 0.74 | ns | -0.040 |
R:GCACTGCAACAGTGAAAAGC | ||||||||||||
Hr11 | KM370166 | (TTTC)14 | F:CTCTTGCAATGAAGGCAATG | 2.0 mM/0.5 μM | 65-55 | 106-154 | 37 | 12 | 0.87 | 0.86 | ns | -0.018 |
R:CTGCCATGAGCTACCATGAG | ||||||||||||
Hr12 | KM370167 | (GATA)12 | F:TTGGTTTTCAGATCTTCTGGTG | 2.5 mM/0.5 μM | 60-50 | 277-293 | 38 | 4 | 0.42 | 0.60 | ** | 0.140 |
R:GAGTCTTCTGCCTGCTGGAC | ||||||||||||
Hr13 | KM370168 | (TTTC)13 | F:CCGAAGCCAATCTGGTTTTA | 2.0 mM/1.0 μM | 65-55 | 321-329 | 34 | 2 | 0.00 | 0.06 | ns | 0.157 |
R:GGGTCCTGCAGAAACACACT |
P FR forward and reverse primer concentration, Ta annealing temperatures of touchdown cycles (see Methods), N number of individuals, NA number of alleles, HO observed heterozygosity, HE expected heterozygosity, HWE probability of deviation from Hardy-Weinberg equilibrium, PNULL null allele frequency estimate (van Oosterhout), ns not significant., **p < 0.01, ***p < 0.001.