Table 2.
Categories of sequence variations
| BM a | RM a | SM a | D a | |
|---|---|---|---|---|
| SNPs | 6944767 | 6871283 | 6734038 | 5950027 |
| INDELs | 696029 | 623282 | 617600 | 451299 |
| Total variants | 7640796 | 7494565 | 7351638 | 6401326 |
| Heterozygous SNPs | 3196568 | 3443594 | 3722921 | 3314982 |
| Homozygous SNPs | 3744651 | 3424501 | 3008107 | 2633108 |
| SNP transitions | 4782645 | 4739843 | 4641040 | 4097573 |
| SNP transversions | 2165670 | 2134628 | 2096008 | 1854391 |
| Multiple SNPs | 3548 | 3188 | 3010 | 1937 |
| Heterozygous INDELs | 210860 | 200062 | 167240 | 144505 |
| Homozygous INDELs | 464812 | 406643 | 436692 | 298970 |
aBM, Blond Mangalica; RM, Red Mangalica; SM, Swallow-belly Mangalica, D, Duroc.