Table 4.
Transcription factors among beneficial fungi- induced genes
| TF family or domain | Induced | Repressed | Number of genes |
|---|---|---|---|
| AP2-ERF | Unigene627_All*, Unigene6402_All*, Unigene12197_All*⊕, Unigene103_All*, Unigene1545_All, Unigene10693_All, Unigene13239_All, Unigene13630_All | 4* (4) | |
| WRKY | Unigene2569_All ⊕ (WRKY19), Unigene13120_All*(WRKY40), Unigene8345_All*(WRKY5), Unigene8346_All*(WRKY5), Unigene3004_All*(WRKY39), Unigene4511_All*(WRKY43), Unigene1640_All(WRKY17) | Unigene1887_All (WRKY23) | 5* (3) |
| Myb | Unigene10890_All*, Unigene13524_All*, Unigene14312_All*, Unigene2947_All | Unigene12533_All, Unigene16161_All*, Unigene1441_All*, Unigene14070_All* | 6* (2) |
| bHLH | Unigene4212_All*, Unigene2945_All*, Unigene13683_All*, Unigene14108_All* | Unigene1570_All*, Unigene15208_All*, Unigene12890_All, | 6* (1) |
| HOX | Unigene11426_All*, Unigene888_All, | Unigene9904_All, Unigene7407_All*, Unigene14238_All | 2* (3) |
| NAC | Unigene14999_All*⊕, Unigene8664_All*, Unigene16437_All*, Unigene11336_All* | Unigene5046_All* | 5* |
| ARF | Unigene10085_All (ARF9), Unigene9466_All (ARF9) | (2) | |
| GRAS | Unigene2120_All(SC)*, Unigene10121_All, Unigene4453_All (scarecrow-like), Unigene6482_All (SC), Unigene13312_All (SC), Unigene15630_All, Unigene456_All | 1* (6) | |
| BTB/POZ | Unigene2160_All, Unigene351_All, Unigene352_All | Unigene11206_All | (4) |
| C3H | Unigene156_All, Unigene209_All*, Unigene10727_All*⊕ | Unigene16285_All, Unigene81_All | 2* (3) |
| GATA | Unigene1952_All*, Unigene10179_All* | Unigene1691_All, Unigene10219_All* | 3* (1) |
| C2H2 | Unigene2954_All*, | Unigene2352_All* | 2* |
| dof | Unigene3028_All*, | 1* | |
| A20AN1 | Unigene2954_All*, Unigene10730_All | 1* (1) | |
| CO-like | Unigene4931_All | (1) | |
| Hsf | Unigene13648_All*, Unigene4980_All* | 2* | |
| Trihelix | Unigene2892_All | (1) | |
| ASG | Unigene3840_All | (1) | |
| WD | Unigene4225_All | (1) | |
| MADs | Unigene4681_All | (1) | |
| MACPF | Unigene8197_All | (1) | |
| BLH | Unigene8238_All | (1) | |
| A-2b | Unigene13648_All*, Unigene4980_All | 1* (1) | |
| UNE | Unigene4910_All | Unigene10862_All* | 1* (1) |
| rf | Unigene14563_All* | 1* | |
| MYC | Unigene15000_All* | 1* | |
| RAX | Unigene1589_All* | 1* | |
| NF-YC | Unigene16018_All* | 1* | |
| bZIP | Unigene4820_All, | (1) |
Lists of TFs in this table included specifically regulated TFs in OM formation and * co-regulated genes in three treatments; ⊕qPCR validation; number in parenthesis referred to the gene number regulated by OM formation.