Table 1.
Primer details | Primer's name | Nucleotide sequence of primer (5′-3′) | Length (mer) | Tm (°C) | GC content (%) | Size of the amplicon |
---|---|---|---|---|---|---|
Primers used for partial clone, full length cDNA and heterologous expression | ||||||
Degenerate | WsSGTF2 | TGGCTACATCTGGACTCCTCAT | 22 | 57.3 | 50.0 | 370 bp |
WsSGTR2 | TGGTTCATCACGGTGGTGCT | 20 | 59.4 | 55.0 | ||
3′RACE | GymGTF1 | GGCACTGGAGAATACAGGACAGAG | 24 | 58.8 | 54.2 | 684 bp |
GymGTF2 | CCTCGTTGATTGCCCTCATGACTG | 24 | 59.9 | 54.2 | ||
5′RACE | GymGTR1 | GGTTTAGGCCCCTTCTGTATCCAC | 24 | 59.2 | 54.2 | 1.7 kb |
GymGTR2 | CCAACAACATCAACCAGAGGGCC | 23 | 60.6 | 56.5 | ||
GymURD01 | AGAGACTCGATGATGGCCTTGAGC | 24 | 60.5 | 54.2 | ||
GymURD02 | AATCACTGAAGTTAGCATGAGTAGCCAGCC | 30 | 61.6 | 46.7 | ||
GymURD03 | ACTCCTGTAATTTCTTAGCCATAGCC | 26 | 56.5 | 42.3 | ||
Complete ORF | 2.3GymFLF1 | TTGGATTAACATATTTGAGCATCCAGGC |
28 | 57.6 | 39.3 | 2.1 kb |
2.3GymFLF2 | TTGAGCATCCAGGCTTCTCTTGCATGG |
27 | 62.8 | 51.9 | ||
2.3GymFLR1 | ATTCTGTAATTCCTTGTTCCGTTGTAAACC | 30 | 57.5 | 36.7 | ||
pET-28a expression | PTGGTF0N | CATATGGATTCTGATGGGACTGGC | 24 | 57.4 | 50.0 | 2.1 kb |
PTGGTR0B | GGATCCCTAAGAACAACAAGGCAGG | 25 | 59.4 | 52.0 | ||
| ||||||
Primers used for semiquantitative and real-time PCR expression studies | ||||||
RT-PCR | Actin3F | TTGCCGAGATAATGGCCTAC | 20 | 54.6 | 50.0 | 250 bp |
Actin3R | TACCGCGACTTCGATCTTTT | 20 | 54.0 | 45.0 | ||
SGTF2 | TGGCTACATCTGGACTCCTCAT | 22 | 57.3 | 50.0 | 370 bp | |
SGTR2 | TGGTTCATCACGGTGGTGCT | 20 | 59.4 | 55.0 | ||
Real-time PCR | PTGymGTF2 | CCTCGTTGATTGCCCTCATGACTG | 24 | 59.9 | 54.2 | 350 bp |
PT1.8GymFL1 | GGATCCCTAAGAACAACAAGGCAGGCTG | 28 | 62.7 | 53.6 |
∗Restriction sites for pET-28a expression are highlighted in bold and underlined.