Table 4.
Analysis of polymorphism in 15 Melampsora larici-populina isolates.
| Isolate | SNPs | % Polymorphism in CDS | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Tr/Tv | SNPs in exon | SNPs in intron | SNPs intergenic | Non-synonymous SNP | Deletion | Insertion | MNV | SNV | |
| 93ID6 | 2.30 | 33,428 | 16,489 | 112,753 | 15,950 | 5.0 | 5.7 | 18.3 | 20.5 |
| 02Y5 | 2.30 | 32,904 | 16,325 | 111,439 | 15,553 | 5.5 | 5.4 | 15.9 | 20.5 |
| 09BS12 | 2.34 | 26,086 | 13,365 | 96,958 | 12,905 | 5.2 | 5.6 | 16.8 | 19.1 |
| 94ZZ15 | 2.29 | 31,938 | 16,056 | 107,707 | 15,252 | 6.2 | 5.7 | 17.2 | 20.5 |
| 94ZZ20 | 2.29 | 31,035 | 15,461 | 104,424 | 14,859 | 5.2 | 5.2 | 17.7 | 20.6 |
| 08EA47 | 2.30 | 29,848 | 14,986 | 105,497 | 14,493 | 5.3 | 5.5 | 17.3 | 19.9 |
| 95XD10 | 2.42 | 29,932 | 14,817 | 101,940 | 15,950 | 4.5 | 4.9 | 14.8 | 20.4 |
| 08EA20 | 2.30 | 35,069 | 17,230 | 117,423 | 16,911 | 5.3 | 5.4 | 18.0 | 20.7 |
| 08EA77 | 2.35 | 32,152 | 16,383 | 113,703 | 15,653 | 5.4 | 5.4 | 17.1 | 19.8 |
| 97CF1 | 2.33 | 29,566 | 14,649 | 98,403 | 14,218 | 5.7 | 6.1 | 17.9 | 20.7 |
| 08KE26 | 2.36 | 27,137 | 13,886 | 105,297 | 13,862 | 5.3 | 5.6 | 16.5 | 18.5 |
| 9683B13 | 2.33 | 29,776 | 14,719 | 99,109 | 14,442 | 5.1 | 5.5 | 17.7 | 20.7 |
| 98AG31 | 2.27 | 18,749 | 9335 | 58,793 | 8825 | 6.6 | 5.8 | 19.9 | 21.6 |
| 93JE3 | 2.36 | 32,155 | 15,684 | 109,490 | 15,651 | 4.9 | 5.4 | 18.0 | 20.4 |
| 98AR1 | 2.21 | 31,389 | 15,352 | 108,948 | 14,441 | 4.7 | 5.2 | 17.0 | 20.2 |
CDS, Coding DNA sequence. Tr/Tv, rate of transition to transversion; MNV, Multiple Nucleotide Variants; SNV/SNP, Single Nucleotide Variant/Polymorphism.