TABLE 1.
DNA segment | Amplified strand | First PCR
|
Nested PCR
|
||
---|---|---|---|---|---|
Primer | 5′ position | Primer | 5′ position | ||
SA | Lower | CRTCCTATAAATTACTCAATCATA | −20559 | CCCAAACTAAAATACAATAAC | −20476 |
TYGGTGAAAGGTTAGATGTTAATT | −20182 | GTGGTGGTTTATGTTTGTAAT | −20225 | ||
SB/SC | Upper | GTAGAAGGTTTTTATAGAGGTAAT | −2777 | GTTTGAAATTAATATATGAGGTTb | −2719 |
CATATTTTAAAAAACTACCTCAAACTA | −1919 | CCCTCTATCTACCAAACTAAb | −2431 | ||
GGAGTATAGTATATTTATTGATGAc | −2343 | ||||
CCATTTTATCAACTACAATCTAAc | −1984 | ||||
SD | Lower | ACAACTACCTACATATATCCTTAA | −1676 | ACCCACRCTAAAATTCAATAA | −1583 |
TAGTTAGAGTTATATTTGGTAAAT | −1292 | GTAATATGTTTTATTTTTAGGTA | −1330 | ||
SE | Upper | GAGATGGTAGAAATAGTATTTTT | −1155 | GGAAGATTTTGGTAATGTTAT | −1010 |
CTCAATCCTCCCTCAACATA | −507 | TTACCTCCTTACAAAACCTAA | −532 | ||
SG | Upper | GGTTAGGATAGATGTTTTAGTTGGAT | +846 | TAGGGTAATTTGTAGTTATAGTT | +906 |
CCCCTAAAACCCTATTCAAA | +1230 | CCTCCATCAACCCTAAATAA | +1203 | ||
SH | Lower | CCCAAAACCAAAACACTAAAA | +2085 | CCCCAAAAAACATAAACTAAA | +2142 |
TATGATAAGGAATGGAAGGAT | +2417 | GGGGATAAATATTTGGTTAT | +2395 | ||
SI | Upper | TTTGGAGGAGGTGTTTATTGT | +3215 | TTAGAGTTTTTAGGGAGTTTT | +3254 |
CRCCCTCCATTACAATCATAA | +3708 | CCCAACAAACCATCATAAAA | +3640 | ||
SJ | Lower | CAACCAACCCAACRTAACACTA | +17125 | AAACTACAACATAAAACCRAAAC | +17187 |
GATGGTATGTAATTTGTGATTTT | +17674 | GAAGGTGTATTTTTTGGTATT | +17570 | ||
SK | Lower | CTAATTATAAAACCCACTCCAATA | +51865 | CTTAACRCTAAAAACTTTCTCCTAA | +51956 |
GGGATTTGGGTTGTGTTTATT | +52307 | GAGYGGTTTTGGGTTTTTAT | +52407 | ||
SL | Upper | GGTTGGTTAAGATAGTATGGATT | −1872 | GTGGGTGAGAAATTGTGTTTT | −1814 |
CTTACACCTAAAAACRAAATTTAC | −1522 | AAATCRTACCATTAAACTCTAAC | −1555 |
Positions are expressed relative to the transcription start site of MAGE-A1.
SB segment.
SC segment.