Skip to main content
. 2014 Sep 15;9(9):e106545. doi: 10.1371/journal.pone.0106545

Table 2. Consensus sequence and number of sequence variants found in ISR building blocks.

Building block Sequence length Nr. of sequences Nr. of variants Consensus sequence
Start 29 bp 95 4 AAGGAGAATTACCTACTGTTTAATTTTGA
Ntrna 26 bp 72 5 GGGTTCGTTTTTACGAATACTCAAAA
Trna 186 bp 23 11 AAGTTCTTTACGAACTTTATATATGGGGGTGTAGCTCAGTTGGGA GAGCACTTGCCTTGCAAGCAAGGGGTCAGGAGTTCGACTCTCCTC ATCTCCACCATTTAAGAGTATATTACTTAAATCTTTGATTTACTTAG TAGCCTCTTACAATGCACTTATAGCTTAAATTTATACAAGCTTTGTGCG
DR 9 bp 335 8 TTAGCACTT
20 bp 20 bp 3 1 TAAGCAACGGAATTTATTCG
33 bp 33 bp 132 42 TAAGCAACGGAATTTATTCGTTGGCGCTGTGCT
53 bp 53 bp 98 35 TAAGCAACAGAATAAACTGAACGCATGTGAAGTTTGTTTGTTG GCGCTGTGCG
End 114 bp 95 33 TGAAAACTGCATATATATATTTAGTGATATGACATCTAATTTGTA ATATATAAAGCTGATAACTTTTTAAAATTATCGAAGTTGATAGCT TCTAATCTATCAAACCTTTTTAAC

Only the representatives (n = 95) of non-redundant sets were used to calculate the consensus sequence and to determine the number of sequence variants.