Table 3. Functional annotation of sugarcane full-length cDNA contigs.
Database | Number of annotated contigs (% from total) | Number of different annotations/categoriesa |
GO | 78,273 (40%) | 5,876 |
KEGG pathways | 14,298 (7.3%) | 132 |
PFAM | 57,527 (29.4%) | 3,822 |
Phytozomeb | 139,980 (71.5%) | 6,274 |
For some databases, several contigs showed more than one annotation or categorization.
Based on annotation from Sorghum bicolor, Z. mays, P. virgatum, Setaria italica, O. sativa, and B. distachyon.