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. 2014 Sep 15;9(9):e107729. doi: 10.1371/journal.pone.0107729

Table 4. MD/MM-PB(GB)SA binding affinity estimates for NAM and isoNAM in SIRT3:Ac-CS2:NAD+ and Sir2Tm:Ac-p53:NAD+.

SIRT3:Ac-CS2:NAD+:NAM Sir2Tm:Ac-p53:NAD+:NAM SIRT3:Ac-CS2:NAD+:isoNAM
Average Std. Dev. Average Std. Dev. Average Std. Dev.
ΔVDWAALS −20.34 1.90 −19.94 1.87 −19.46 2.32
ΔEEL −24.10 2.84 −18.48 2.95 −11.58 3.69
ΔEGB 27.51 1.64 20.57 1.69 18.10 2.02
ΔESURF −2.89 0.08 −2.88 0.08 −2.75 0.16
ΔEPB 33.96 2.84 22.49 2.98 23.94 2.93
ΔENPOLAR −14.47 0.25 −14.44 0.28 −13.49 0.59
ΔEDISPER 25.20 0.59 24.60 0.64 24.47 0.93
ΔG_gas −44.44 2.59 −38.42 2.84 −31.04 3.67
ΔG_solv_igb2 24.62 1.63 17.69 1.67 15.35 2.01
ΔG_solv_pb 44.70 3.20 32.65 3.15 34.92 3.33
ΔG_igb2 −19.82 1.89 −20.74 2.05 −15.68 2.48
ΔG_pb 0.26 3.26 −5.78 3.51 3.89 4.18