Table 1.
Characteristics of the CDH1 polymorphisms genotyped in the dataset
| rs no. | Chromosomal positiona | SNP function | Allelesb | MAFc |
|---|---|---|---|---|
| rs16260 | chr16:68771034 | nearGene-5 | A/C (FWD) | 0.29 |
| rs9929218 | chr16:68820946 | intron | A/G (FWD) | 0.29 |
| rs7186053 | chr16:68839293 | intron | A/G (FWD) | 0.45 |
| rs4783573 | chr16:68840588 | intron | A/G (FWD) | 0.27 |
| rs16958383 | chr16:68857000 | intron | A/G (FWD) | 0.19 |
| rs1801552 | chr16:68857441 | cds-synon (Ala692Ala) | C/T (FWD) | 0.36 |
FWD forward, REV revers
aAccordnig to the February 2009 human reference sequence (GRCh37)
bAccording to the single nucleotide polymorphism database (dbSNP); Underline denotes the minor allele in the control samples
c MAF minor allele frequency calculated from the control samples