Table 2.
Regions of sequence diversity in pMP1046A
| Region of diversity: base coordinates (size bp) | Gene | Start position | End position | Gene product |
|---|---|---|---|---|
| R1: 14543..37152 ( 22609 ) | LSJ_2012 | 14616 | 15683 | Hypothetical membrane protein |
| LSJ_2013 | 15827 | 16882 | Hypothetical membrane protein | |
| LSJ_2014 | 17072 | 17242 | Conserved hypothetical protein | |
| LSJ_2015 | 17257 | 18330 | Putative thiosulfate sulfurtransferase | |
| LSJ_2016 | 18782 | 20686 | D-proline reductase, prdA | |
| LSJ_2017 | 20688 | 21005 | Conserved hypothetical protein | |
| LSJ_2018 (P) | 20995 | 21720 | Proline reductase, probable pseudogene | |
| LSJ_2019 | 21740 | 22480 | Conserved hypothetical protein | |
| LSJ_2020 | 22501 | 22974 | D-proline reductase | |
| LSJ_2021 | 22999 | 24018 | Proline racemase | |
| LSJ_2022 | 24031 | 24909 | Hypothetical membrane protein | |
| LSJ_2023 | 25005 | 26603 | Amino acid permease | |
| LSJ_2024 | 26684 | 27322 | Conserved hypothetical protein | |
| LSJ_2025 | 27434 | 27691 | Conserved hypothetical protein | |
| LSJ_2026 | 27691 | 29583 | Selenocysteine-specific elongation factor | |
| LSJ_2027 | 29573 | 30712 | Cysteine desulfurase | |
| LSJ_2028 | 30713 | 32113 | L-seryl-tRNA selenium transferase, selA | |
| LSJ_2029 | 32119 | 32448 | Conserved hypothetical protein | |
| LSJ_2030 | 32560 | 33870 | NADH dehydrogenase | |
| LSJ_2031 | 33963 | 34937 | Selenophosphate synthase, selD | |
| LSJ_2032 | 35037 | 36209 | Hypothetical membrane protein | |
| LSJ_2033 | 36228 | 36473 | Conserved hypothetical protein | |
| LSJ_2034 | 36698 | 37129 | Conserved hypothetical protein | |
| R2: 52540..64667 ( 12127 ) | LSJ_2049 | 52523 | 54520 | Conserved hypothetical protein |
| LSJ_2050 | 54507 | 55370 | Conserved hypothetical protein | |
| LSJ_2051 | 55360 | 56145 | Conserved hypothetical protein | |
| LSJ_2052 | 56204 | 58906 | DNA methylase | |
| LSJ_2053 | 58913 | 60871 | DEAD/DEAH box helicase family protein | |
| LSJ_2054 | 60864 | 62066 | Conserved hypothetical protein | |
| LSJ_2055 | 62137 | 64662 | Conserved hypothetical protein | |
| R3: 88322..98017 ( 9695 ) | LSJ_2078 (P) | 88463 | 88739 | Transposase, probable pseudogene |
| LSJ_2079 | 88814 | 89641 | Transposase ISLasa15, IS3 family | |
| LSJ_2080 | 90080 | 91279 | MFS Transport protein | |
| LSJ_2081 | 91593 | 92813 | MFS Transport protein | |
| LSJ_2082 | 92865 | 93761 | Transcriptional regulators, LysR family | |
| LSJ_2083 | 93920 | 94756 | Conserved hypothetical protein | |
| LSJ_2084 | 94785 | 95612 | 2-deoxy-D-gluconate 3-dehydrogenase | |
| LSJ_2085 | 95631 | 97346 | Fumarate reductase flavoprotein subunit | |
| LSJ_2086 | 97367 | 98242 | Shikimate 5-dehydrogenase | |
| R4: 100291..121050 ( 20759 ) | LSJ_2089 | 100815 | 101621 | Conserved hypothetical protein |
| LSJ_2090 | 101614 | 101832 | Hypothetical protein | |
| LSJ_2091 | 102071 | 102190 | Hypothetical protein | |
| LSJ_2092 | 102310 | 103761 | Plasmid replication protein-primase | |
| LSJ_2093 | 103865 | 104446 | Hypothetical membrane protein | |
| LSJ_2094 | 104468 | 104620 | Hypothetical membrane protein | |
| LSJ_2095 | 104818 | 105573 | Hypothetical protein | |
| LSJ_2096 | 105746 | 106198 | Hypothetical secreted protein | |
| LSJ_2097 | 106590 | 106853 | Hypothetical protein | |
| LSJ_2098 | 106973 | 107965 | Conserved hypothetical protein | |
| LSJ_2099 | 108439 | 108663 | Hypothetical secreted protein, possible signal peptide | |
| LSJ_2100 | 109441 | 110277 | Hypothetical protein | |
| LSJ_2101 | 110287 | 111057 | Putative DNA-entry nuclease | |
| LSJ_2102 | 111064 | 111543 | Conserved hypothetical protein | |
| LSJ_2103 | 111576 | 111743 | Hypothetical secreted protein | |
| LSJ_2104 | 111993 | 112103 | Hypothetical protein | |
| LSJ_2105 | 112160 | 112756 | Conserved hypothetical protein | |
| LSJ_2106 | 112749 | 115094 | Conserved hypothetical protein | |
| LSJ_2107 | 115914 | 118892 | Hypothetical protein | |
| LSJ_2108 | 119031 | 120428 | Conserved hypothetical protein | |
| LSJ_2109 | 120839 | 121078 | Hypothetical protein | |
| R5: 147401..153337 (5936) | LSJ_2136c | 147401 | 148081 | Fructose-6-phosphate aldolase |
| LSJ_2137c | 148148 | 148528 | PTS system, glucitol/sorbitol-specific IIA component | |
| LSJ_2138c | 148565 | 149590 | PTS system, glucitol/sorbitol-specific IIBC component | |
| LSJ_2139c | 149607 | 150149 | PTS system, glucitol/sorbitol-specific IIC2 component | |
| LSJ_2140c | 150161 | 150658 | Sorbitol operon activator | |
| LSJ_2141c | 150659 | 152518 | Sorbitol operon transcription regulator | |
| LSJ_2142c | 152534 | 153337 | Sorbitol-6-phosphate 2-dehydrogenase | |
| R6: 160003..164289 ( 4286 ) | LSJ_2150 | 160058 | 160575 | Transposase ISLasa1a, IS1223 family |
| LSJ_2151 | 160607 | 161473 | IS1223 family transposase | |
| LSJ_2152 | 161537 | 162544 | Transposase fragment | |
| LSJ_2153 | 162694 | 163983 | ISL3 family transposase | |
| R7: 167503..182637 ( 15134 ) | LSJ_2155 | 166716 | 167537 | Integrase |
| LSJ_2156 | 167573 | 167839 | Hypothetical protein | |
| LSJ_2157 | 168343 | 169011 | Hypothetical protein | |
| LSJ_2158 | 169087 | 169419 | Hypothetical protein | |
| LSJ_2159 | 169424 | 170053 | Conserved hypothetical protein | |
| LSJ_2160 | 170398 | 170802 | Toxin antitoxin system, toxin component | |
| LSJ_2161 | 170802 | 171023 | Toxin antitoxin system, antitoxin component | |
| LSJ_2162 | 171466 | 172614 | AbpD bacteriocin export accessory protein | |
| LSJ_2163 (P) | 1172630 | 174788 | AbpT bacteriocin export accessory protein, probable pseudogene due to frameshift | |
| LSJ_2164 | 175441 | 175680 | Hypothetical membrane spanning protein | |
| LSJ_2165 | 175717 | 176511 | AbpR response regulator | |
| LSJ_2166 | 176525 | 177817 | AbpK sensory Transduction Histidine Kinase | |
| LSJ_2167 | 177819 | 177938 | AbpIP induction peptide | |
| LSJ_2168 (P) | 178086 | 178232 | AbpIM bacteriocin immunity protein | |
| LSJ_2169 | 178371 | 178577 | Abp118 bacteriocin beta peptide | |
| LSJ_2170 | 178595 | 178789 | Abp118 bacteriocin alpha peptide | |
| LSJ_2171 | 178795 | 179052 | Bacteriocin-like prepeptide | |
| LSJ_2172 | 179182 | 179355 | Nonfunctional salvaricin B precursor | |
| LSJ_2173 | 179588 | 179851 | Hypothetical membrane spanning protein | |
| LSJ_2174 | 179890 | 180219 | Hypothetical protein | |
| LSJ_2175 | 180441 | 181415 | Hypothetical membrane associated protein | |
| LSJ_2176 (P) | 1181578 | 182227 | HAD-superfamily hydrolase, probable pseudogene due to frameshift | |
| LSJ_2177 | 182338 | 182679 | Hypothetical protein | |
| R8: 189782..193560 ( 3778 ) | LSJ_2187 | 189909 | 191414 | Sodium solute symporter |
| LSJ_2188 | 191432 | 192556 | Na(+)/H(+) antiporter | |
| LSJ_2189 | 192623 | 193354 | Xylose isomerase domain protein | |
| R9: 204232..215364 ( 11132 ) | LSJ_2201 | 204295 | 206286 | Transketolase |
| LSJ_2202 | 206304 | 206957 | Transaldolase | |
| LSJ_2203 | 207466 | 208521 | L-iditol 2-dehydrogenase | |
| LSJ_2204 | 208562 | 209611 | Alcohol dehydrogenase | |
| LSJ_2205 | 209625 | 210896 | Galacitol PTS, EIIC | |
| LSJ_2206 | 210923 | 211219 | Galactitol PTS, EIIB | |
| LSJ_2207 | 211254 | 211706 | Galacitol PTS, EIIA | |
| LSJ_2208 | 211888 | 212688 | DeoR family transcriptional regulator | |
| LSJ_2209 | 212812 | 215178 | Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase |
Genes associated with the regions of diversity (R1-R9) in pMP1046A, as illustrated in Figure 3. Genes present on the reverse strand are denoted by the suffix c following the locus tag (LSJ_XXX). Pseudogenes are denoted by (P). Numbers in italics represents the size of the region in bp.