Table 3.
Putative interacting pairs of transcription factors and their details of their structural data. The table highlights the PDB ID of the template used for modeling the transcription factor along with its percentage identity with the query and resolution of the template. It is appropriately listed, if the structure of a transcription factor is already deposited in PDB. For transcription factors, MYB and WRKY, the structures were there in PDB, whereas for bHLH, bZIP, ARF and HSF, the structures were modeled using comparative modeling.
| PUTATIVE INTERACTING PAIRS | CRYSTAL STRUCTURE | PDB ID* | ORGANISM TO WHICH TEMPLATE BELONG | % IDENTITY WITH TEMPLATE | RESOLUTION (Å) |
|---|---|---|---|---|---|
| MYB | Yes | 2AJE | – | – | – |
| bHLH | No | 1R05 | Homo sapiens | 29.4 | NMR |
|
| |||||
| bZIP | No | 1I04 | Homo sapiens | 39.7 | 3.0 |
| bHLH | No | 1R05 | Homo sapiens | 29.4 | NMR |
|
| |||||
| MYB | Yes | 2AJE | – | – | – |
| ARF | No | 1WID | Arabidopsis thaliana | 34.8 | NMR |
|
| |||||
| WRKY | Yes | 2AYD | – | – | – |
| HSF | No | 1HKS | Drosophila melanogaster | 44.4 | NMR |
Note:
*
PDB ID of crystal structure if known else of the template used for modeling.