Table 5.
Regulatory proteins and other non-structural proteins; gene product # and (pham #, specific to this analysis)
| Function | Abouo | Davies | Jimmer1 and Jimmer2 | Emery | phiIBB_Pl23 |
|---|---|---|---|---|---|
| LysM domain-containing protein (peptidoglycan binding) | gp22 (22) | gp22 (22) | gp25 (22) | gp17 (5623) | |
| Cell wall hydrolase/late control D | gp23 (23) | gp23 (23) | gp26 (23) | ||
| Subtilisin-like serine protease | gp42 (3042) | ||||
| Peptidoglycan hydrolase | gp36 (36) | gp36 (36) | gp38 (36) | gp31 (5634) | gp21 (351) |
| Beta-lactamase | gp47 (5949) | ||||
| Holin | gp22 (5924) | ||||
| Phage-like element PBSX protein | gp26 (26), gp28 (28) | gp26 (26), gp28 (28) | gp28 (26), gp30 (28) | gp22 (5628) | |
| bhlA/Bacteriocin | gp34 (34) | gp34 (34) | gp36 (34) | gp29 (34) | gp20 (5923) |
| Membrane protein | gp35 (35), gp44 (44) | gp35 (35), gp44 and gp45 (44) | gp34 (5637), gp53 and gp54 (44) | ||
| Antirepressor | gp41 (41), gp68 (71) | gp41 (41), gp72 (71) | gp19 (951), gp79 (71) | gp39 (951) | |
| Tyrosine Recombinase XerC | gp43 (43) | gp43 (43) | gp1 (5608), gp47 (43) | ||
| Accessory gene regulator B family protein | gp45 (45) | gp46 (45) | gp55 (45) | ||
| AbrB family transcriptional regulator | gp72 (2041) | ||||
| RuvC Holliday junction resolvase | gp59 (5961) | ||||
| ArpU family transcriptional regulator | gp61 (2944) | ||||
| ABC transporter-like protein | gp74 (76) | gp77 (76) | gp84 (76) | gp23 (5925) | |
| Arc-like DNA binding domain | gp52 (53) | gp54 (53) | gp62 and gp63 (53) | ||
| Single-stranded DNA-binding protein | gp62 (65), gp63 (66) | gp66 (65), gp67 (66) | gp73 (65), gp74 (66) | ||
| HNH endonuclease | gp64 (67) | gp68 (67) | gp75 (67) | gp64A (5966) | |
| Serine recombinase | gp49 (3048) | gp33 (3048) | |||
| SOS-response repressor and protease LexA | gp31 (5934) | ||||
| Recombinational DNA repair protein RecT | gp49 (5948) | ||||
| Phage replication protein O | gp76 (3058) | gp52 (5951) | |||
| DNA replication protein | gp66 (69) | gp70 (69) | gp77 (3059) | gp99 (653) | gp50 (5952) |
| YopX protein | gp71 (74) | gp75 (74) | gp82 (74) | gp54 (5966) | |
| Toxin 1 | gp26 (5928) | ||||
| Recombinase recU | gp73 (75) | gp76 (75) | gp83 (75) | ||
| dUTPase | gp76 (78) | gp79 (78) | gp86 (78) | ||
| Site-specific DNA methylase | gp79 (3134) | gp81 (80) | gp88 (80) | gp33 (5636) | |
| RNA polymerase sigma-70 factor | gp91 (90) | gp91 (90) | gp99 (90) | gp94 (5683) | |
| DNA-dependent DNA polymerase family A | gp81 (634) | ||||
| Virulence-associated E family protein | gp96 (651) | ||||
| Stage V sporulation protein K | gp95 (4849) | ||||
| VRR-NUC domain-containing protein | gp98 (652) | ||||
| Transcriptional regulator (HTH, XRE) | gp49 (50), gp50 (51), gp51 (52), gp54 (57), gp56 (59) | gp51 (50), gp52 (51), gp53 (52), gp56 (55), gp57 (56), gp58 (57), gp60 (59) | gp52 and gp56 (50), gp57 (51), gp58 (52), gp67 (59), gp18 (3031), gp17 (3030), gp65 (3057), gp60 (3054), gp61 (3055) | gp60 (5656), gp89 (5678), gp40 (2605), gp65 (2691), gp64 (2692), gp48 (5649), gp59 (5655), gp49 (5650) | gp32 (5935), gp55 (5957) |