Table 6.
Genetic comparison of small genome myovirus phams and gene products within each pham
| Function | Pham number | Phages Abouo, Davies | Phages Jimmer1, Jimmer2 | Clostridium phage PhiC2 | Lactobacillus phage KC5a | Streptococcus phage EJ-1 |
|---|---|---|---|---|---|---|
| Terminase (small subunit) | 1 | gp1 | gp1 | gp34 | ||
| Portal protein | 3 | gp3 | gp4 | gp3 | gp36 | gp40 |
| Head morphogenesis protein | 4 | gp4 | gp5 | gp4 | (gp37)* | (gp41)** |
| Minor structural protein | 5 | gp5 | gp6 | gp38 | (gp46)*** | |
| Tail sheath protein | 14 | gp14 | gp15 | gp13 | gp45 | gp53 |
| Baseplate J family protein | 27 | gp27 | gp29 | gp25 | gp53 | gp61 |
| XRE family transcriptional regulator | 52 | gp51, 53 | gp58 | gp5 | ||
| Arc-like DNA-binding protein | 53 | gp52, 54 | gp62, 63 | gp53, 60 |
No genes in Emery were grouped into any of the phams listed in this table. Genes followed by an asterisk were not grouped into the same phams as the P. larvae phages using Phamerator. The average E-value and percent identity when compared to Abouo, Davies, Jimmer1, and Jimmer2 is reported below:
*KC5a gp37 = 1 × 10-46, 31% identity.
**EJ-1 gp41 = 1 × 10-39, 31% identity.
***EJ-1 gp46 = 8 × 10-14, 32% identity.